13 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GET1	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. (216 aa)
	W7A516_COCMI	t-SNARE coiled-coil homology domain-containing protein. (369 aa)
	W6YRW3_COCMI	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (519 aa)
	W6YSR8_COCMI	Uncharacterized protein. (505 aa)
	W6YX42_COCMI	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (488 aa)
	GET3	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...] (339 aa)
	W6ZGT3_COCMI	Uncharacterized protein. (315 aa)
	W6ZBF7_COCMI	UBIQUITIN_CONJUGAT_2 domain-containing protein. (277 aa)
	W6ZAN3_COCMI	MSP domain-containing protein. (295 aa)
	W6Z8M5_COCMI	t-SNARE coiled-coil homology domain-containing protein. (344 aa)
	W6Z5L2_COCMI	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (88 aa)
	W6Z2Y9_COCMI	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (133 aa)
	W6ZI38_COCMI	Uncharacterized protein. (69 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GET1	GET3	W6ZJ71	W6Z0T5	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol.	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	0.997
GET1	W6YSR8_COCMI	W6ZJ71	W6YSR8	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol.	Uncharacterized protein.	0.688
GET1	W6ZGT3_COCMI	W6ZJ71	W6ZGT3	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol.	Uncharacterized protein.	0.675
GET3	GET1	W6Z0T5	W6ZJ71	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol.	0.997
GET3	W6YSR8_COCMI	W6Z0T5	W6YSR8	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Uncharacterized protein.	0.630
GET3	W6Z8M5_COCMI	W6Z0T5	W6Z8M5	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	t-SNARE coiled-coil homology domain-containing protein.	0.800
GET3	W6ZGT3_COCMI	W6Z0T5	W6ZGT3	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Uncharacterized protein.	0.996
W6YSR8_COCMI	GET1	W6YSR8	W6ZJ71	Uncharacterized protein.	Protein GET1; Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Acts as a membrane receptor for soluble GET3, which recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol.	0.688
W6YSR8_COCMI	GET3	W6YSR8	W6Z0T5	Uncharacterized protein.	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	0.630
W6YSR8_COCMI	W6Z8M5_COCMI	W6YSR8	W6Z8M5	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.702
W6YSR8_COCMI	W6ZAN3_COCMI	W6YSR8	W6ZAN3	Uncharacterized protein.	MSP domain-containing protein.	0.627
W6YSR8_COCMI	W6ZBF7_COCMI	W6YSR8	W6ZBF7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.579
W6YSR8_COCMI	W6ZGT3_COCMI	W6YSR8	W6ZGT3	Uncharacterized protein.	Uncharacterized protein.	0.519
W6YSR8_COCMI	W6ZI38_COCMI	W6YSR8	W6ZI38	Uncharacterized protein.	Uncharacterized protein.	0.997
W6Z8M5_COCMI	GET3	W6Z8M5	W6Z0T5	t-SNARE coiled-coil homology domain-containing protein.	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	0.800
W6Z8M5_COCMI	W6YSR8_COCMI	W6Z8M5	W6YSR8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.702
W6Z8M5_COCMI	W6ZAN3_COCMI	W6Z8M5	W6ZAN3	t-SNARE coiled-coil homology domain-containing protein.	MSP domain-containing protein.	0.655
W6Z8M5_COCMI	W7A516_COCMI	W6Z8M5	W7A516	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.809
W6ZAN3_COCMI	W6YSR8_COCMI	W6ZAN3	W6YSR8	MSP domain-containing protein.	Uncharacterized protein.	0.627
W6ZAN3_COCMI	W6Z8M5_COCMI	W6ZAN3	W6Z8M5	MSP domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.655