14 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z763_COCMI	Uncharacterized protein. (402 aa)
	W6Z806_COCMI	AAA domain-containing protein; Belongs to the AAA ATPase family. (750 aa)
	W6Z8W0_COCMI	Uncharacterized protein. (227 aa)
	W6ZGA5_COCMI	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	W6ZH06_COCMI	Uncharacterized protein. (212 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6ZRL2_COCMI	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	W6ZRS7_COCMI	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	W6Z2E5_COCMI	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)
	W6Z264_COCMI	Uncharacterized protein. (213 aa)
	W6YT59_COCMI	Uncharacterized protein. (151 aa)
	W6YU68_COCMI	Uncharacterized protein. (225 aa)
	W6YVW5_COCMI	Uncharacterized protein. (314 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YT59_COCMI	W6YU68_COCMI	W6YT59	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.513
W6YT59_COCMI	W6ZL07_COCMI	W6YT59	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.637
W6YU68_COCMI	W6YT59_COCMI	W6YU68	W6YT59	Uncharacterized protein.	Uncharacterized protein.	0.513
W6YU68_COCMI	W6YVW5_COCMI	W6YU68	W6YVW5	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6Z264_COCMI	W6YU68	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6Z2E5_COCMI	W6YU68	W6Z2E5	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.577
W6YU68_COCMI	W6Z763_COCMI	W6YU68	W6Z763	Uncharacterized protein.	Uncharacterized protein.	0.655
W6YU68_COCMI	W6Z806_COCMI	W6YU68	W6Z806	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.764
W6YU68_COCMI	W6Z8W0_COCMI	W6YU68	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.998
W6YU68_COCMI	W6ZGA5_COCMI	W6YU68	W6ZGA5	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.577
W6YU68_COCMI	W6ZL07_COCMI	W6YU68	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6ZRL2_COCMI	W6YU68	W6ZRL2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.997
W6YU68_COCMI	W6ZRS7_COCMI	W6YU68	W6ZRS7	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.613
W6YU68_COCMI	W6ZYQ9_COCMI	W6YU68	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.996
W6YVW5_COCMI	W6YU68_COCMI	W6YVW5	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YVW5_COCMI	W6Z264_COCMI	W6YVW5	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.934
W6YVW5_COCMI	W6Z806_COCMI	W6YVW5	W6Z806	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.957
W6YVW5_COCMI	W6Z8W0_COCMI	W6YVW5	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.954
W6YVW5_COCMI	W6ZH06_COCMI	W6YVW5	W6ZH06	Uncharacterized protein.	Uncharacterized protein.	0.496
W6YVW5_COCMI	W6ZL07_COCMI	W6YVW5	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.914