7 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6YU68_COCMI	Uncharacterized protein. (225 aa)
	W6Z264_COCMI	Uncharacterized protein. (213 aa)
	W6Z8W0_COCMI	Uncharacterized protein. (227 aa)
	W7A2U1_COCMI	Uncharacterized protein. (197 aa)
	W6ZGI0_COCMI	Uncharacterized protein. (214 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YU68_COCMI	W6Z264_COCMI	W6YU68	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6Z8W0_COCMI	W6YU68	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.998
W6YU68_COCMI	W6ZGI0_COCMI	W6YU68	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6ZL07_COCMI	W6YU68	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6ZYQ9_COCMI	W6YU68	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.996
W6YU68_COCMI	W7A2U1_COCMI	W6YU68	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.960
W6Z264_COCMI	W6YU68_COCMI	W6Z264	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.994
W6Z264_COCMI	W6Z8W0_COCMI	W6Z264	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.982
W6Z264_COCMI	W6ZGI0_COCMI	W6Z264	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.863
W6Z264_COCMI	W6ZL07_COCMI	W6Z264	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.958
W6Z264_COCMI	W6ZYQ9_COCMI	W6Z264	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.982
W6Z264_COCMI	W7A2U1_COCMI	W6Z264	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.729
W6Z8W0_COCMI	W6YU68_COCMI	W6Z8W0	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.998
W6Z8W0_COCMI	W6Z264_COCMI	W6Z8W0	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.982
W6Z8W0_COCMI	W6ZGI0_COCMI	W6Z8W0	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.941
W6Z8W0_COCMI	W6ZL07_COCMI	W6Z8W0	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.962
W6Z8W0_COCMI	W6ZYQ9_COCMI	W6Z8W0	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.997
W6Z8W0_COCMI	W7A2U1_COCMI	W6Z8W0	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.950
W6ZGI0_COCMI	W6YU68_COCMI	W6ZGI0	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.978
W6ZGI0_COCMI	W6Z264_COCMI	W6ZGI0	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.863