(16 nodes) Collagen chain trimerization, and Prolyl 3-hydroxylase network (Sarcophilus harrisii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EMID1	EMI domain containing 1. (432 aa)
	COL13A1	Collagen type XIII alpha 1 chain. (635 aa)
	COL28A1	VWFA domain-containing protein. (662 aa)
	COL25A1	Uncharacterized protein. (503 aa)
	P3H2	Fe2OG dioxygenase domain-containing protein. (538 aa)
	G3VZD7_SARHA	Uncharacterized protein. (1727 aa)
	C1QTNF7	C1q and TNF related 7. (299 aa)
	SERPINH1	Serpin family H member 1; Belongs to the serpin family. (416 aa)
	C1QTNF2	C1q and TNF related 2. (289 aa)
	COL16A1	Collagen type XVI alpha 1 chain. (1614 aa)
	G3WF14_SARHA	Uncharacterized protein. (326 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (741 aa)
	G3WG49_SARHA	Uncharacterized protein. (615 aa)
	COL27A1	Fibrillar collagen NC1 domain-containing protein. (1867 aa)
	COL23A1	Uncharacterized protein. (515 aa)
	COL15A1	Collagen type XV alpha 1 chain. (1309 aa)

Your Current Organism:

Sarcophilus harrisii

NCBI taxonomy Id: 9305
Other names: S. harrisii, Sarcophilus laniarius, Tasmanian devil

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QTNF2	COL23A1	ENSSHAP00000011122	ENSSHAP00000018791	C1q and TNF related 2.	Uncharacterized protein.	0.559
C1QTNF2	EMID1	ENSSHAP00000011122	ENSSHAP00000003991	C1q and TNF related 2.	EMI domain containing 1.	0.549
C1QTNF2	G3WG49_SARHA	ENSSHAP00000011122	ENSSHAP00000014404	C1q and TNF related 2.	Uncharacterized protein.	0.448
C1QTNF7	G3WG49_SARHA	ENSSHAP00000008555	ENSSHAP00000014404	C1q and TNF related 7.	Uncharacterized protein.	0.426
COL13A1	COL16A1	ENSSHAP00000005627	ENSSHAP00000012430	Collagen type XIII alpha 1 chain.	Collagen type XVI alpha 1 chain.	0.418
COL13A1	G3VZD7_SARHA	ENSSHAP00000005627	ENSSHAP00000008542	Collagen type XIII alpha 1 chain.	Uncharacterized protein.	0.421
COL13A1	G3WF14_SARHA	ENSSHAP00000005627	ENSSHAP00000014019	Collagen type XIII alpha 1 chain.	Uncharacterized protein.	0.515
COL13A1	P3H2	ENSSHAP00000005627	ENSSHAP00000007730	Collagen type XIII alpha 1 chain.	Fe2OG dioxygenase domain-containing protein.	0.419
COL15A1	COL23A1	ENSSHAP00000019846	ENSSHAP00000018791	Collagen type XV alpha 1 chain.	Uncharacterized protein.	0.544
COL16A1	COL13A1	ENSSHAP00000012430	ENSSHAP00000005627	Collagen type XVI alpha 1 chain.	Collagen type XIII alpha 1 chain.	0.418
COL16A1	COL25A1	ENSSHAP00000012430	ENSSHAP00000007559	Collagen type XVI alpha 1 chain.	Uncharacterized protein.	0.432
COL16A1	COL27A1	ENSSHAP00000012430	ENSSHAP00000017379	Collagen type XVI alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.466
COL16A1	P3H2	ENSSHAP00000012430	ENSSHAP00000007730	Collagen type XVI alpha 1 chain.	Fe2OG dioxygenase domain-containing protein.	0.430
COL16A1	SERPINH1	ENSSHAP00000012430	ENSSHAP00000010863	Collagen type XVI alpha 1 chain.	Serpin family H member 1; Belongs to the serpin family.	0.507
COL23A1	C1QTNF2	ENSSHAP00000018791	ENSSHAP00000011122	Uncharacterized protein.	C1q and TNF related 2.	0.559
COL23A1	COL15A1	ENSSHAP00000018791	ENSSHAP00000019846	Uncharacterized protein.	Collagen type XV alpha 1 chain.	0.544
COL23A1	COL25A1	ENSSHAP00000018791	ENSSHAP00000007559	Uncharacterized protein.	Uncharacterized protein.	0.514
COL23A1	COL8A1	ENSSHAP00000018791	ENSSHAP00000014068	Uncharacterized protein.	Collagen type VIII alpha 1 chain.	0.437
COL23A1	EMID1	ENSSHAP00000018791	ENSSHAP00000003991	Uncharacterized protein.	EMI domain containing 1.	0.447
COL23A1	G3VZD7_SARHA	ENSSHAP00000018791	ENSSHAP00000008542	Uncharacterized protein.	Uncharacterized protein.	0.506