STRINGSTRING
APR54772.1 APR54772.1 APR51671.1 APR51671.1 polA polA APR54801.1 APR54801.1 ung ung nth nth APR51970.1 APR51970.1 APR53464.1 APR53464.1 APR53607.1 APR53607.1 APR53692.1 APR53692.1 APR53928.1 APR53928.1 APR53933.1 APR53933.1 ligA-2 ligA-2 mutM mutM APR54221.1 APR54221.1 APR54573.1 APR54573.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APR54772.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
APR51671.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (921 aa)
APR54801.1A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (337 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (254 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (220 aa)
APR51970.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
APR53464.1DNA-3-methyladenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
APR53607.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
APR53692.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
APR53928.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
APR53933.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
ligA-2DNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (710 aa)
mutMDNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (271 aa)
APR54221.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
APR54573.1single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
Your Current Organism:
Sphingomonas koreensis
NCBI taxonomy Id: 93064
Other names: DSM 15582, IFO 16723, JCM 11456, KCCM 41069, KCTC 2882, NBRC 16723, S. koreensis, Sphingomonas koreensis Lee et al. 2001, Sphingomonas sp. ABOJT, Sphingomonas sp. ABOJU, Sphingomonas sp. ABOJV, Sphingomonas sp. JSS-26, Sphingomonas sp. JSS-28, Sphingomonas sp. JSS26, Sphingomonas sp. JSS28, strain JSS26
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