(27 nodes) Protein export network (Suillus luteus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0C9ZD17	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence. (190 aa)
	A0A0C9ZGK6	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence. (244 aa)
	A0A0C9ZIH3	Unplaced genomic scaffold CY34scaffold_337, whole genome shotgun sequence; Belongs to the heat shock protein 70 family. (654 aa)
	A0A0C9ZKU2	Unplaced genomic scaffold CY34scaffold_279, whole genome shotgun sequence. (74 aa)
	A0A0C9ZPF7	Unplaced genomic scaffold CY34scaffold_209, whole genome shotgun sequence. (162 aa)
	A0A0C9ZW58	Unplaced genomic scaffold CY34scaffold_762, whole genome shotgun sequence. (316 aa)
	A0A0C9ZW85	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (568 aa)
	A0A0D0A101	Unplaced genomic scaffold CY34scaffold_78, whole genome shotgun sequence. (276 aa)
	A0A0D0A1J7	Unplaced genomic scaffold CY34scaffold_472, whole genome shotgun sequence. (157 aa)
	A0A0D0A8X0	Unplaced genomic scaffold CY34scaffold_276, whole genome shotgun sequence. (323 aa)
	A0A0D0AFK7	Unplaced genomic scaffold CY34scaffold_4, whole genome shotgun sequence. (318 aa)
	A0A0D0AFZ8	Unplaced genomic scaffold CY34scaffold_347, whole genome shotgun sequence. (424 aa)
	A0A0D0AH20	Unplaced genomic scaffold CY34scaffold_1, whole genome shotgun sequence. (70 aa)
	A0A0D0AH37	Unplaced genomic scaffold CY34scaffold_147, whole genome shotgun sequence. (656 aa)
	A0A0D0AJE9	Unplaced genomic scaffold CY34scaffold_121, whole genome shotgun sequence. (124 aa)
	A0A0D0AMB1	Unplaced genomic scaffold CY34scaffold_884, whole genome shotgun sequence. (175 aa)
	A0A0D0ATL0	Signal peptidase I. (207 aa)
	A0A0D0AV81	Unplaced genomic scaffold CY34scaffold_456, whole genome shotgun sequence. (477 aa)
	A0A0D0B021	Signal peptidase subunit 3. (178 aa)
	A0A0D0B2Q6	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (618 aa)
	A0A0D0B596	Unplaced genomic scaffold CY34scaffold_2, whole genome shotgun sequence. (293 aa)
	A0A0D0BEE7	Unplaced genomic scaffold CY34scaffold_130, whole genome shotgun sequence. (302 aa)
	A0A0D0BI72	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (96 aa)
	A0A0D0BIJ0	Unplaced genomic scaffold CY34scaffold_36, whole genome shotgun sequence. (667 aa)
	A0A0D0BJB8	Protein yippee-like; Belongs to the yippee family. (110 aa)
	CY34DRAFT_9483	Protein yippee-like; Belongs to the yippee family. (122 aa)
	A0A0D0BSM5	Unplaced genomic scaffold CY34scaffold_5, whole genome shotgun sequence. (163 aa)

Your Current Organism:

Suillus luteus

NCBI taxonomy Id: 930992
Other names: S. luteus UH-Slu-Lm8-n1, Suillus luteus UH-Slu-Lm8-n1

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C9ZD17	A0A0C9ZPF7	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_209, whole genome shotgun sequence.	0.984
A0A0C9ZD17	A0A0C9ZW58	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_762, whole genome shotgun sequence.	0.985
A0A0C9ZD17	A0A0D0AFK7	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_4, whole genome shotgun sequence.	0.765
A0A0C9ZD17	A0A0D0AFZ8	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_347, whole genome shotgun sequence.	0.765
A0A0C9ZD17	A0A0D0AH20	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_1, whole genome shotgun sequence.	0.424
A0A0C9ZD17	A0A0D0AJE9	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_121, whole genome shotgun sequence.	0.986
A0A0C9ZD17	A0A0D0AV81	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_456, whole genome shotgun sequence.	0.936
A0A0C9ZD17	A0A0D0B2Q6	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.	0.985
A0A0C9ZD17	A0A0D0B596	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_2, whole genome shotgun sequence.	0.908
A0A0C9ZD17	A0A0D0BEE7	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_130, whole genome shotgun sequence.	0.986
A0A0C9ZD17	A0A0D0BI72	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.781
A0A0C9ZD17	A0A0D0BIJ0	Unplaced genomic scaffold CY34scaffold_498, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_36, whole genome shotgun sequence.	0.980
A0A0C9ZGK6	A0A0C9ZIH3	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_337, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.763
A0A0C9ZGK6	A0A0C9ZKU2	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_279, whole genome shotgun sequence.	0.994
A0A0C9ZGK6	A0A0C9ZPF7	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_209, whole genome shotgun sequence.	0.475
A0A0C9ZGK6	A0A0D0A101	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_78, whole genome shotgun sequence.	0.791
A0A0C9ZGK6	A0A0D0A1J7	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_472, whole genome shotgun sequence.	0.763
A0A0C9ZGK6	A0A0D0AH20	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_1, whole genome shotgun sequence.	0.530
A0A0C9ZGK6	A0A0D0AH37	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_147, whole genome shotgun sequence.	0.531
A0A0C9ZGK6	A0A0D0AMB1	Unplaced genomic scaffold CY34scaffold_393, whole genome shotgun sequence.	Unplaced genomic scaffold CY34scaffold_884, whole genome shotgun sequence.	0.926