(6 nodes) Peptidase C26 network (Mycolicibacterium rhodesiae JS60)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	guaA	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. (514 aa)
	EHB55112.1	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: mva:Mvan_0022 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal. (228 aa)
	EHB56107.1	TIGRFAM: Para-aminobenzoate synthase, component I; Anthranilate synthase, glutamine amidotransferase domain; KEGG: rha:RHA1_ro06665 anthranilate synthase component II and I/aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal; Glutamine amidotransferase class-I, C-terminal; Anthranilate synthase component I, N-terminal. (689 aa)
	EHB53549.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: mva:Mvan_3511 glutamine amidotransferase class-I. (237 aa)
	carA	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mpa:MAP1118 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family. (377 aa)
	pyrG	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (586 aa)

Your Current Organism:

Mycolicibacterium rhodesiae JS60

NCBI taxonomy Id: 931627
Other names: M. rhodesiae JS60, Mycobacterium rhodesiae JS60

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHB53549.1	guaA	MycrhDRAFT_4012	MycrhDRAFT_0833	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: mva:Mvan_3511 glutamine amidotransferase class-I.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.817
EHB55112.1	EHB56107.1	MycrhDRAFT_2306	MycrhDRAFT_3301	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: mva:Mvan_0022 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal.	TIGRFAM: Para-aminobenzoate synthase, component I; Anthranilate synthase, glutamine amidotransferase domain; KEGG: rha:RHA1_ro06665 anthranilate synthase component II and I/aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal; Glutamine amidotransferase class-I, C-terminal; Anthranilate synthase component I, N-terminal.	0.989
EHB55112.1	guaA	MycrhDRAFT_2306	MycrhDRAFT_0833	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: mva:Mvan_0022 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.458
EHB56107.1	EHB55112.1	MycrhDRAFT_3301	MycrhDRAFT_2306	TIGRFAM: Para-aminobenzoate synthase, component I; Anthranilate synthase, glutamine amidotransferase domain; KEGG: rha:RHA1_ro06665 anthranilate synthase component II and I/aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal; Glutamine amidotransferase class-I, C-terminal; Anthranilate synthase component I, N-terminal.	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: mva:Mvan_0022 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal.	0.989
EHB56107.1	guaA	MycrhDRAFT_3301	MycrhDRAFT_0833	TIGRFAM: Para-aminobenzoate synthase, component I; Anthranilate synthase, glutamine amidotransferase domain; KEGG: rha:RHA1_ro06665 anthranilate synthase component II and I/aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal; Glutamine amidotransferase class-I, C-terminal; Anthranilate synthase component I, N-terminal.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.690
carA	guaA	MycrhDRAFT_4910	MycrhDRAFT_0833	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mpa:MAP1118 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.862
carA	pyrG	MycrhDRAFT_4910	MycrhDRAFT_6047	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mpa:MAP1118 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	0.608
guaA	EHB53549.1	MycrhDRAFT_0833	MycrhDRAFT_4012	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: mva:Mvan_3511 glutamine amidotransferase class-I.	0.817
guaA	EHB55112.1	MycrhDRAFT_0833	MycrhDRAFT_2306	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: mva:Mvan_0022 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal.	0.458
guaA	EHB56107.1	MycrhDRAFT_0833	MycrhDRAFT_3301	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	TIGRFAM: Para-aminobenzoate synthase, component I; Anthranilate synthase, glutamine amidotransferase domain; KEGG: rha:RHA1_ro06665 anthranilate synthase component II and I/aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal; Glutamine amidotransferase class-I, C-terminal; Anthranilate synthase component I, N-terminal.	0.690
guaA	carA	MycrhDRAFT_0833	MycrhDRAFT_4910	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mpa:MAP1118 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family.	0.862
guaA	pyrG	MycrhDRAFT_0833	MycrhDRAFT_6047	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	0.977
pyrG	carA	MycrhDRAFT_6047	MycrhDRAFT_4910	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mpa:MAP1118 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; Belongs to the CarA family.	0.608
pyrG	guaA	MycrhDRAFT_6047	MycrhDRAFT_0833	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.977