STRINGSTRING
tolQ_1 tolQ_1 exbD_1 exbD_1 ANC47120.1 ANC47120.1 exbD_2 exbD_2 tolQ_2 tolQ_2 ANC45463.1 ANC45463.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tolQ_1Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
exbD_1Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
ANC47120.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
exbD_2Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
tolQ_2Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
ANC45463.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (240 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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