STRINGSTRING
mhpA_2 mhpA_2 ophA1_1 ophA1_1 mdlC_1 mdlC_1 aidB aidB mnmC mnmC alkJ_1 alkJ_1 ANC44559.1 ANC44559.1 hmp_2 hmp_2 ANC44420.1 ANC44420.1 ifcA_2 ifcA_2 ANC44374.1 ANC44374.1 ANC44373.1 ANC44373.1 ubiF ubiF yfjD yfjD dus_1 dus_1 ubiH ubiH corC corC ytfL_2 ytfL_2 glcE-2 glcE-2 ANC47085.1 ANC47085.1 glcE glcE ANC43968.1 ANC43968.1 ANC47065.1 ANC47065.1 murB murB ytfL_1 ytfL_1 wrbA_3 wrbA_3 aliB aliB ANC43738.1 ANC43738.1 thcD_2 thcD_2 ANC43710.1 ANC43710.1 mhpA_1 mhpA_1 ANC43638.1 ANC43638.1 ANC43631.1 ANC43631.1 wrbA_2 wrbA_2 ANC46992.1 ANC46992.1 hmp_1 hmp_1 cutS cutS ANC43426.1 ANC43426.1 betA betA ifcA_1 ifcA_1 ilvI ilvI ANC43131.1 ANC43131.1 wrbA_1 wrbA_1 ANC43090.1 ANC43090.1 cysJ_2 cysJ_2 lpdG lpdG ANC46853.1 ANC46853.1 ilvB_1 ilvB_1 camA camA mphP mphP ANC46613.1 ANC46613.1 ANC47483.1 ANC47483.1 gor gor ANC46494.1 ANC46494.1 ANC46341.1 ANC46341.1 dus_2 dus_2 lpdA lpdA sdhA sdhA bbsG bbsG ANC45992.1 ANC45992.1 pyrK pyrK ANC45942.1 ANC45942.1 oxc oxc ANC45863.1 ANC45863.1 ANC45855.1 ANC45855.1 ANC45851.1 ANC45851.1 ifcA_3 ifcA_3 hsaA hsaA ANC45762.1 ANC45762.1 ANC45755.1 ANC45755.1 ANC45717.1 ANC45717.1 etfA_2 etfA_2 czcO czcO ANC45664.1 ANC45664.1 ophA1_2 ophA1_2 ilvB_2 ilvB_2 ANC45646.1 ANC45646.1 ahpF ahpF pobA pobA ANC45567.1 ANC45567.1 ycgF ycgF mhpA_4 mhpA_4 ANC45384.1 ANC45384.1 xsc xsc alkJ_3 alkJ_3 mhpA_3 mhpA_3 mhbM mhbM ANC45037.1 ANC45037.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mhpA_2Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
ophA1_1Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
mdlC_1Benzoylformate decarboxylase; Catalyzes the formation of benzaldehyde from benzoylformate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (542 aa)
aidBGMC family oxidoreductase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
mnmCHypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (683 aa)
alkJ_1Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
ANC44559.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
hmp_2Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
ANC44420.1Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
ifcA_2Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
ANC44374.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
ANC44373.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (395 aa)
ubiFUbiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
yfjDMagnesium and cobalt efflux protein CorC; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
dus_1tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (326 aa)
ubiHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
corCMagnesium/cobalt efflux protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
ytfL_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
glcE-2Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
ANC47085.1Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
glcEGlycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
ANC43968.1Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
ANC47065.12-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (338 aa)
ytfL_1Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
wrbA_3NAD(P)H-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
aliBcyclohexanecarboxyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
ANC43738.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
thcD_2Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (820 aa)
ANC43710.1FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
mhpA_13-(3-hydroxyphenyl)propionate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
ANC43638.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
ANC43631.1BEC protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
wrbA_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (212 aa)
ANC46992.1Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1018 aa)
hmp_1Flavohemoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (400 aa)
cutSXanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
ANC43426.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
betADehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
ifcA_1Carboxyvinyl-carboxyphosphonate phosphorylmutase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
ilvIAcetolactate synthase 3 catalytic subunit; Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
ANC43131.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
wrbA_1Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WrbA family. (195 aa)
ANC43090.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (131 aa)
cysJ_2Sulfite reductase [NADPH] flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. (621 aa)
lpdGDihydrolipoyl dehydrogenase; Catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
ANC46853.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
ilvB_1Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
camAPyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
mphPCDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
ANC46613.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
ANC47483.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
gorGlutathione-disulfide reductase; Maintains high levels of reduced glutathione. (453 aa)
ANC46494.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (529 aa)
ANC46341.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
dus_2tRNA dihydrouridine synthase DusA; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (337 aa)
lpdADihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
sdhAFumarate reductase (quinol) flavoprotein subunit; Part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD- [...] (591 aa)
bbsGacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
ANC45992.1GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
pyrKOxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
ANC45942.14-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
oxcoxalyl-CoA decarboxylase; Catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (567 aa)
ANC45863.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
ANC45855.1Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
ANC45851.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
ifcA_3Catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
hsaAMonooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
ANC45762.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
ANC45755.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
ANC45717.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)
etfA_2Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
czcOPyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
ANC45664.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (459 aa)
ophA1_2Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
ilvB_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (550 aa)
ANC45646.1Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
ahpFAlkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
pobACatalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
ANC45567.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
ycgFDiguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
mhpA_43-(3-hydroxyphenyl)propionate hydroxylase; Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI). (625 aa)
ANC45384.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
xscSulfoacetaldehyde acetyltransferase; Catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (588 aa)
alkJ_3Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
mhpA_3FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
mhbMSalicylate hydroxylase; Catalyzes the formation of catechol from salicylate; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
ANC45037.1isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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