(35 nodes) ATP-binding cassette (ABC) transporter complex network (Pandoraea pnomenusa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	znuC	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (259 aa)
	opuCC	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	proV_2	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	potA_5	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (360 aa)
	potH_2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	yecS_2	ABC transporter permease; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	yecS_1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	ugpC_2	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (350 aa)
	potA_1	ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (358 aa)
	mglA	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	cysW_2	Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ycjP_1	Glycerol-3-phosphate transporter; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (281 aa)
	glnP_1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	potA_4	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (347 aa)
	proX	Glycine betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	proV_1	NIPSNAP domain containing protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	potA_3	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (356 aa)
	potA_2	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (369 aa)
	yecS_7	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	fbpC2	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (369 aa)
	ycjP_2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	potA_8	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (370 aa)
	lptF	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	lptG	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	metI	DL-methionine transporter permease subunit; Part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	potA_7	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	gltK_1	Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	yecS_6	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	glnP_2	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	potA_6	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (360 aa)
	phnE	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	lptB_11	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	artQ_2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	yecS_3	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	artQ_1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)

Your Current Organism:

Pandoraea pnomenusa

NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
artQ_1	artQ_2	A6P55_11740	A6P55_12860	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
artQ_1	glnP_1	A6P55_11740	A6P55_04575	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
artQ_1	glnP_2	A6P55_11740	A6P55_15265	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
artQ_1	gltK_1	A6P55_11740	A6P55_15585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
artQ_1	yecS_2	A6P55_11740	A6P55_06805	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
artQ_1	yecS_3	A6P55_11740	A6P55_12855	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
artQ_1	yecS_6	A6P55_11740	A6P55_15270	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
artQ_1	yecS_7	A6P55_11740	A6P55_20930	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
artQ_2	artQ_1	A6P55_12860	A6P55_11740	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
artQ_2	glnP_1	A6P55_12860	A6P55_04575	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
artQ_2	glnP_2	A6P55_12860	A6P55_15265	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
artQ_2	gltK_1	A6P55_12860	A6P55_15585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
artQ_2	yecS_2	A6P55_12860	A6P55_06805	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
artQ_2	yecS_3	A6P55_12860	A6P55_12855	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
artQ_2	yecS_6	A6P55_12860	A6P55_15270	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
artQ_2	yecS_7	A6P55_12860	A6P55_20930	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
cysW_2	fbpC2	A6P55_21550	A6P55_19545	Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.438
cysW_2	potA_1	A6P55_21550	A6P55_22375	Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.534
cysW_2	potA_2	A6P55_21550	A6P55_01215	Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.461
cysW_2	potA_3	A6P55_21550	A6P55_02035	Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.478

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