STRINGSTRING
hcrC hcrC ascD ascD ndoR ndoR ANC46502.1 ANC46502.1 ANC47501.1 ANC47501.1 ANC46693.1 ANC46693.1 sdhB sdhB fdx_2 fdx_2 ANC45891.1 ANC45891.1 ophA1_2 ophA1_2 iorA_2 iorA_2 ophA1_1 ophA1_1 hmp_2 hmp_2 nqo3 nqo3 mphP mphP A6P55_09150 A6P55_09150 iorA_1 iorA_1 cutS cutS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hcrC(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
ascDHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
ndoRNaphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
ANC46502.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (964 aa)
ANC47501.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
ANC46693.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
sdhBPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
fdx_22Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
ANC45891.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)
ophA1_2Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
iorA_2(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
ophA1_1Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
hmp_2Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
nqo3NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (770 aa)
mphPCDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
A6P55_09150Energy-dependent translational throttle protein EttA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
iorA_1Hypothetical protein; Frameshifted; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
cutSXanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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