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fadK_2 fadK_2 hcl_1 hcl_1 acsA_1 acsA_1 bclA_1 bclA_1 prpE prpE bclA_2 bclA_2 fadD_3 fadD_3 hcl_2 hcl_2 fadD_4 fadD_4 hbaA hbaA fadD_5 fadD_5 trsA trsA fadD_6 fadD_6 acsA_3 acsA_3 fadD_7 fadD_7 fadD_8 fadD_8 acsA_4 acsA_4 fadD_1 fadD_1 fadK_1 fadK_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fadK_2cyclohexanecarboxylate-CoA ligase; AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
hcl_1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
acsA_1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
bclA_12-aminobenzoate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
prpEEmrB/QacA subfamily drug resistance transporter; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
bclA_24-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
fadD_3tRNA-Arg; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
hcl_2acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
fadD_4acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
hbaALong-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
fadD_5AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
trsAHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (626 aa)
fadD_6AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
acsA_3Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (660 aa)
fadD_7Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
fadD_8Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
acsA_4AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
fadD_1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
fadK_1Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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