STRINGSTRING
yabJ_5 yabJ_5 ridA_1 ridA_1 tdcF tdcF amnD_2 amnD_2 yabJ_4 yabJ_4 yabJ_3 yabJ_3 yabJ_2 yabJ_2 amnD_1 amnD_1 yabJ_1 yabJ_1 rutC rutC ANC46666.1 ANC46666.1 ANC46060.1 ANC46060.1 ridA_2 ridA_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yabJ_5Reactive intermediate/imine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
ridA_1Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
tdcFEnamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
amnD_22-aminomuconate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
yabJ_4Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
yabJ_3Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
yabJ_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
amnD_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
yabJ_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
rutCHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
ANC46666.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
ANC46060.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
ridA_2Translation initiation inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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