STRINGSTRING
cysJ_1 cysJ_1 hmp_1 hmp_1 cysJ_2 cysJ_2 ndoR ndoR ophA1_2 ophA1_2 fpr_2 fpr_2 yqjH yqjH pyrK pyrK fpr_1 fpr_1 ophA1_1 ophA1_1 benC benC hmp_2 hmp_2 boxA boxA ascD ascD mphP mphP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cysJ_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (587 aa)
hmp_1Flavohemoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (400 aa)
cysJ_2Sulfite reductase [NADPH] flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. (621 aa)
ndoRNaphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
ophA1_2Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
fpr_2ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
yqjHNADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
pyrKOxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
fpr_1ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
ophA1_1Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
benCFerric reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
hmp_2Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
boxAbenzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
ascDHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
mphPCDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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