(9 nodes) Polycyclic aromatic hydrocarbon degradation network (Pandoraea pnomenusa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pcaH	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ndoA	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	ndoR	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	ligA_2	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	ANC45098.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	pcaG	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	ANC45646.1	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	ANC45804.1	4,5-dihydroxyphthalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	ANC46590.1	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)

Your Current Organism:

Pandoraea pnomenusa

NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANC45098.1	ligA_2	A6P55_13845	A6P55_12640	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ANC45646.1	ndoA	A6P55_17125	A6P55_06080	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
ANC45646.1	ndoR	A6P55_17125	A6P55_06095	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
ANC46590.1	ndoA	A6P55_22865	A6P55_06080	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ANC46590.1	ndoR	A6P55_22865	A6P55_06095	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
ligA_2	ANC45098.1	A6P55_12640	A6P55_13845	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ligA_2	ndoA	A6P55_12640	A6P55_06080	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
ligA_2	pcaG	A6P55_12640	A6P55_16680	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ligA_2	pcaH	A6P55_12640	A6P55_16675	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ndoA	ANC45646.1	A6P55_06080	A6P55_17125	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
ndoA	ANC46590.1	A6P55_06080	A6P55_22865	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ndoA	ligA_2	A6P55_06080	A6P55_12640	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
ndoA	ndoR	A6P55_06080	A6P55_06095	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
ndoR	ANC45646.1	A6P55_06095	A6P55_17125	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
ndoR	ANC46590.1	A6P55_06095	A6P55_22865	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
ndoR	ndoA	A6P55_06095	A6P55_06080	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
ndoR	pcaG	A6P55_06095	A6P55_16680	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
ndoR	pcaH	A6P55_06095	A6P55_16675	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
pcaG	ligA_2	A6P55_16680	A6P55_12640	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
pcaG	ndoR	A6P55_16680	A6P55_06095	Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591

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