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vioD vioD bclA_1 bclA_1 namA_1 namA_1 bclA_2 bclA_2 gatA_3 gatA_3 ndoA ndoA ndoR ndoR echA8_4 echA8_4 bsdB bsdB acyP_2 acyP_2 mdlC_1 mdlC_1 xylC_2 xylC_2 ophA1_1 ophA1_1 kshA_1 kshA_1 ligB ligB ligA_2 ligA_2 echA8_8 echA8_8 namA_2 namA_2 xylC_3 xylC_3 echA8_11 echA8_11 mdlB mdlB ANC45852.1 ANC45852.1 fdx_2 fdx_2 echA8_2 echA8_2 gatA_2 gatA_2 azr azr acyP_1 acyP_1 caiD_1 caiD_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vioDMonooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
bclA_12-aminobenzoate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
namA_1Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (780 aa)
bclA_24-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
gatA_3Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
ndoANaphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
ndoRNaphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
echA8_4enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
bsdB3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (208 aa)
acyP_2Acylphosphatase; Catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
mdlC_1Benzoylformate decarboxylase; Catalyzes the formation of benzaldehyde from benzoylformate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (542 aa)
xylC_2Salicylaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (489 aa)
ophA1_1Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
kshA_1Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
ligBProtocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
ligA_2Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
echA8_8enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (273 aa)
namA_2NADH:flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
xylC_3Salicylaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (483 aa)
echA8_11enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
mdlBAlpha-hydroxy-acid oxidizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
ANC45852.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
fdx_22Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
echA8_2enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
gatA_2MFS transporter; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
azrNADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
acyP_1Acylphosphatase; Catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
caiD_1enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (269 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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