72 items (Penicillium oxalicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDE_04450	Uncharacterized protein. (610 aa)
	PDE_02289	RING-type domain-containing protein. (118 aa)
	PDE_01942	DUF1746 domain-containing protein. (349 aa)
	PDE_01811	WD_REPEATS_REGION domain-containing protein. (712 aa)
	PDE_01609	ANAPC5 domain-containing protein. (768 aa)
	PDE_01554	Uncharacterized protein. (2100 aa)
	PDE_06963	CULLIN_2 domain-containing protein; Belongs to the cullin family. (950 aa)
	PDE_07410	CULLIN_2 domain-containing protein; Belongs to the cullin family. (874 aa)
	PDE_07319	Uncharacterized protein. (577 aa)
	PDE_07801	Uncharacterized protein. (409 aa)
	PDE_07826	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (269 aa)
	PDE_09708	Uncharacterized protein. (591 aa)
	PDE_08073	Uncharacterized protein. (615 aa)
	PDE_08578	Uncharacterized protein. (336 aa)
	PDE_08958	BTB domain-containing protein. (1666 aa)
	PDE_00577	WD_REPEATS_REGION domain-containing protein. (661 aa)
	PDE_00984	Uncharacterized protein. (79 aa)
	PDE_00989	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (106 aa)
	PDE_03419	Uncharacterized protein. (617 aa)
	PDE_04000	Uncharacterized protein. (921 aa)
	PDE_04207	Uncharacterized protein. (807 aa)
	PDE_00541	DOC domain-containing protein. (464 aa)
	PDE_05269	Uncharacterized protein. (922 aa)
	PDE_05570	Uncharacterized protein. (328 aa)
	PDE_01148	Uncharacterized protein. (131 aa)
	PDE_01484	F-box domain-containing protein. (580 aa)
	PDE_07318	Uncharacterized protein. (415 aa)
	PDE_03038	Uncharacterized protein. (1102 aa)
	PDE_03538	RBR-type E3 ubiquitin transferase. (644 aa)
	PDE_04391	Uncharacterized protein. (667 aa)
	PDE_04577	Uncharacterized protein. (486 aa)
	PDE_05233	F-box domain-containing protein. (733 aa)
	PDE_09892	TPR_REGION domain-containing protein. (772 aa)
	PDE_09903	TPR_REGION domain-containing protein. (704 aa)
	PDE_05906	Uncharacterized protein. (563 aa)
	PDE_05991	RING-type domain-containing protein. (87 aa)
	PDE_06725	Uncharacterized protein. (840 aa)
	PDE_07737	WD_REPEATS_REGION domain-containing protein. (721 aa)
	PDE_08059	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	PDE_08234	RBR-type E3 ubiquitin transferase. (509 aa)
	PDE_09436	ANK_REP_REGION domain-containing protein. (513 aa)
	PDE_00732	RING-type domain-containing protein. (804 aa)
	PDE_00620	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (463 aa)
	PDE_02383	Uncharacterized protein. (402 aa)
	PDE_02353	Uncharacterized protein. (565 aa)
	PDE_01945	WD_REPEATS_REGION domain-containing protein. (599 aa)
	PDE_00294	UBX domain-containing protein. (523 aa)
	PDE_00128	CULLIN_2 domain-containing protein; Belongs to the cullin family. (764 aa)
	PDE_01628	Uncharacterized protein. (462 aa)
	PDE_01568	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	PDE_00489	Uncharacterized protein. (839 aa)
	PDE_00458	Uncharacterized protein. (534 aa)
	PDE_07961	F-box domain-containing protein. (1141 aa)
	PDE_05990	Uncharacterized protein. (346 aa)
	PDE_05061	UBIQUITIN_CONJUGAT_2 domain-containing protein. (154 aa)
	PDE_08000	CPSF_A domain-containing protein. (1145 aa)
	PDE_06321	RING-type domain-containing protein. (795 aa)
	PDE_08171	Uncharacterized protein. (1029 aa)
	PDE_08467	Uncharacterized protein. (875 aa)
	PDE_08532	TPR_REGION domain-containing protein. (399 aa)
	PDE_09559	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	PDE_09393	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (219 aa)
	PDE_06989	CULLIN_2 domain-containing protein; Belongs to the cullin family. (836 aa)
	PDE_04571	Uncharacterized protein. (390 aa)
	PDE_04320	F-box domain-containing protein. (544 aa)
	PDE_03662	U-box domain-containing protein. (1082 aa)
	PDE_03212	Uncharacterized protein. (409 aa)
	PDE_03202	Uncharacterized protein. (668 aa)
	PDE_05155	Uncharacterized protein. (702 aa)
	PDE_03052	MPN domain-containing protein. (660 aa)
	PDE_02845	CPSF_A domain-containing protein. (1255 aa)
	PDE_02710	F-box domain-containing protein. (584 aa)

Your Current Organism:

Penicillium oxalicum

NCBI taxonomy Id: 933388
Other names: P. oxalicum 114-2, Penicillium oxalicum 114-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDE_00128	PDE_00577	S7Z946	S8AIP7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.622
PDE_00128	PDE_00620	S7Z946	S7ZAH2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.823
PDE_00128	PDE_00989	S7Z946	S8AJR9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.833
PDE_00128	PDE_01484	S7Z946	S8AX98	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.809
PDE_00128	PDE_01568	S7Z946	S7Z7R4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.851
PDE_00128	PDE_01811	S7Z946	S7ZDX4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.441
PDE_00128	PDE_01945	S7Z946	S7Z9V4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.622
PDE_00128	PDE_02289	S7Z946	S7ZFE3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.994
PDE_00128	PDE_02353	S7Z946	S7ZA05	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.760
PDE_00128	PDE_02710	S7Z946	S7ZGJ4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.968
PDE_00128	PDE_03052	S7Z946	S7ZHE0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	MPN domain-containing protein.	0.627
PDE_00128	PDE_03202	S7Z946	S7ZHT9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.978
PDE_00128	PDE_03419	S7Z946	S8AR47	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.650
PDE_00128	PDE_03662	S7Z946	S7ZJ50	CULLIN_2 domain-containing protein; Belongs to the cullin family.	U-box domain-containing protein.	0.514
PDE_00128	PDE_04207	S7Z946	S8AT31	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.487
PDE_00128	PDE_04320	S7Z946	S7ZL32	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.905
PDE_00128	PDE_04391	S7Z946	S8B4H4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.993
PDE_00128	PDE_04571	S7Z946	S7ZLQ1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.665
PDE_00128	PDE_05061	S7Z946	S7ZN44	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.779
PDE_00128	PDE_05155	S7Z946	S7ZHR0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.919