4 items (Penicillium oxalicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDE_09415	Uncharacterized protein. (1000 aa)
	PDE_07543	Uncharacterized protein. (1193 aa)
	PDE_02868	SPX domain-containing protein. (844 aa)
	PDE_09071	Uncharacterized protein. (1032 aa)

Your Current Organism:

Penicillium oxalicum

NCBI taxonomy Id: 933388
Other names: P. oxalicum 114-2, Penicillium oxalicum 114-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDE_02868	PDE_07543	S7ZCE0	S8B1A2	SPX domain-containing protein.	Uncharacterized protein.	0.623
PDE_02868	PDE_09071	S7ZCE0	S7ZUI9	SPX domain-containing protein.	Uncharacterized protein.	0.604
PDE_07543	PDE_02868	S8B1A2	S7ZCE0	Uncharacterized protein.	SPX domain-containing protein.	0.623
PDE_07543	PDE_09071	S8B1A2	S7ZUI9	Uncharacterized protein.	Uncharacterized protein.	0.967
PDE_07543	PDE_09415	S8B1A2	S8A029	Uncharacterized protein.	Uncharacterized protein.	0.831
PDE_09071	PDE_02868	S7ZUI9	S7ZCE0	Uncharacterized protein.	SPX domain-containing protein.	0.604
PDE_09071	PDE_07543	S7ZUI9	S8B1A2	Uncharacterized protein.	Uncharacterized protein.	0.967
PDE_09071	PDE_09415	S7ZUI9	S8A029	Uncharacterized protein.	Uncharacterized protein.	0.858
PDE_09415	PDE_07543	S8A029	S8B1A2	Uncharacterized protein.	Uncharacterized protein.	0.831
PDE_09415	PDE_09071	S8A029	S7ZUI9	Uncharacterized protein.	Uncharacterized protein.	0.858