(8 nodes) Large ribosomal subunit, and Ribosomal protein network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_02146	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (199 aa)
	NEQG_01232	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (162 aa)
	NEQG_00976	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (143 aa)
	NEQG_00984	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (153 aa)
	NEQG_01031	60S ribosomal protein L10. (266 aa)
	NEQG_00064	60s ribosomal protein l3. (393 aa)
	NEQG_00416	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	NEQG_00444	Uncharacterized protein. (218 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00064	NEQG_00416	I3EJ97	I3EK99	60s ribosomal protein l3.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
NEQG_00064	NEQG_00444	I3EJ97	I3EKC7	60s ribosomal protein l3.	Uncharacterized protein.	0.999
NEQG_00064	NEQG_00976	I3EJ97	I3EIW0	60s ribosomal protein l3.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
NEQG_00064	NEQG_00984	I3EJ97	I3EIW8	60s ribosomal protein l3.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
NEQG_00064	NEQG_01031	I3EJ97	I3EJ15	60s ribosomal protein l3.	60S ribosomal protein L10.	0.999
NEQG_00064	NEQG_01232	I3EJ97	I3EH45	60s ribosomal protein l3.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
NEQG_00064	NEQG_02146	I3EJ97	I3EEF2	60s ribosomal protein l3.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
NEQG_00416	NEQG_00064	I3EK99	I3EJ97	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	60s ribosomal protein l3.	0.999
NEQG_00416	NEQG_00444	I3EK99	I3EKC7	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.999
NEQG_00416	NEQG_00976	I3EK99	I3EIW0	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
NEQG_00416	NEQG_00984	I3EK99	I3EIW8	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
NEQG_00416	NEQG_01031	I3EK99	I3EJ15	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	60S ribosomal protein L10.	0.999
NEQG_00416	NEQG_01232	I3EK99	I3EH45	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
NEQG_00416	NEQG_02146	I3EK99	I3EEF2	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
NEQG_00444	NEQG_00064	I3EKC7	I3EJ97	Uncharacterized protein.	60s ribosomal protein l3.	0.999
NEQG_00444	NEQG_00416	I3EKC7	I3EK99	Uncharacterized protein.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
NEQG_00444	NEQG_00976	I3EKC7	I3EIW0	Uncharacterized protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
NEQG_00444	NEQG_00984	I3EKC7	I3EIW8	Uncharacterized protein.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
NEQG_00444	NEQG_01031	I3EKC7	I3EJ15	Uncharacterized protein.	60S ribosomal protein L10.	0.999
NEQG_00444	NEQG_01232	I3EKC7	I3EH45	Uncharacterized protein.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999