(7 nodes) CCR4-NOT complex network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_02013	NOT2_3_5 domain-containing protein. (387 aa)
	NEQG_01642	NOT2_3_5 domain-containing protein. (139 aa)
	NEQG_01260	Uncharacterized protein. (921 aa)
	NEQG_01297	Endo/exonuclease/phosphatase domain-containing protein. (517 aa)
	NEQG_00899	CCR4-NOT transcription complex subunit 7. (262 aa)
	NEQG_00066	Uncharacterized protein. (270 aa)
	NEQG_00559	RRM_1 domain-containing protein. (231 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00066	NEQG_00559	I3EJ99	I3EKP2	Uncharacterized protein.	RRM_1 domain-containing protein.	0.980
NEQG_00066	NEQG_00899	I3EJ99	I3EIN3	Uncharacterized protein.	CCR4-NOT transcription complex subunit 7.	0.993
NEQG_00066	NEQG_01260	I3EJ99	I3EH73	Uncharacterized protein.	Uncharacterized protein.	0.996
NEQG_00066	NEQG_01297	I3EJ99	I3EHB0	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.968
NEQG_00066	NEQG_01642	I3EJ99	I3EG51	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.975
NEQG_00066	NEQG_02013	I3EJ99	I3EFE4	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.994
NEQG_00559	NEQG_00066	I3EKP2	I3EJ99	RRM_1 domain-containing protein.	Uncharacterized protein.	0.980
NEQG_00559	NEQG_00899	I3EKP2	I3EIN3	RRM_1 domain-containing protein.	CCR4-NOT transcription complex subunit 7.	0.972
NEQG_00559	NEQG_01260	I3EKP2	I3EH73	RRM_1 domain-containing protein.	Uncharacterized protein.	0.997
NEQG_00559	NEQG_01297	I3EKP2	I3EHB0	RRM_1 domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.954
NEQG_00559	NEQG_01642	I3EKP2	I3EG51	RRM_1 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.953
NEQG_00559	NEQG_02013	I3EKP2	I3EFE4	RRM_1 domain-containing protein.	NOT2_3_5 domain-containing protein.	0.944
NEQG_00899	NEQG_00066	I3EIN3	I3EJ99	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.993
NEQG_00899	NEQG_00559	I3EIN3	I3EKP2	CCR4-NOT transcription complex subunit 7.	RRM_1 domain-containing protein.	0.972
NEQG_00899	NEQG_01260	I3EIN3	I3EH73	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.995
NEQG_00899	NEQG_01297	I3EIN3	I3EHB0	CCR4-NOT transcription complex subunit 7.	Endo/exonuclease/phosphatase domain-containing protein.	0.993
NEQG_00899	NEQG_01642	I3EIN3	I3EG51	CCR4-NOT transcription complex subunit 7.	NOT2_3_5 domain-containing protein.	0.949
NEQG_00899	NEQG_02013	I3EIN3	I3EFE4	CCR4-NOT transcription complex subunit 7.	NOT2_3_5 domain-containing protein.	0.971
NEQG_01260	NEQG_00066	I3EH73	I3EJ99	Uncharacterized protein.	Uncharacterized protein.	0.996
NEQG_01260	NEQG_00559	I3EH73	I3EKP2	Uncharacterized protein.	RRM_1 domain-containing protein.	0.997