(29 nodes) Negative regulation of gene expression network (Nematocida parisii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_02405	Sm domain-containing protein. (105 aa)
	NEQG_02244	RRM_2 domain-containing protein. (277 aa)
	NEQG_02245	Uncharacterized protein. (143 aa)
	NEQG_01841	Sm domain-containing protein. (114 aa)
	NEQG_02013	NOT2_3_5 domain-containing protein. (387 aa)
	NEQG_01526	RNase_PH domain-containing protein. (213 aa)
	NEQG_01627	RPOL4c domain-containing protein. (116 aa)
	NEQG_01642	NOT2_3_5 domain-containing protein. (139 aa)
	NEQG_01714	Deacetylase sirtuin-type domain-containing protein. (328 aa)
	NEQG_01162	Ring-box protein 1. (90 aa)
	NEQG_01227	PINc domain-containing protein. (251 aa)
	NEQG_01260	Uncharacterized protein. (921 aa)
	NEQG_01324	Prolyl tRNA synthetase. (501 aa)
	NEQG_00874	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (211 aa)
	NEQG_00899	CCR4-NOT transcription complex subunit 7. (262 aa)
	NEQG_00950	Uncharacterized protein. (209 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
	NEQG_00980	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family. (511 aa)
	NEQG_00999	WD_REPEATS_REGION domain-containing protein. (321 aa)
	NEQG_00063	Uncharacterized protein. (285 aa)
	NEQG_00066	Uncharacterized protein. (270 aa)
	NEQG_00239	LSM14 domain-containing protein. (171 aa)
	NEQG_00271	Uncharacterized protein. (267 aa)
	NEQG_00279	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (400 aa)
	NEQG_00321	Uncharacterized protein. (199 aa)
	NEQG_00375	eRF1_1 domain-containing protein. (349 aa)
	NEQG_00438	Nudix hydrolase domain-containing protein. (242 aa)
	NEQG_00448	ATP-dependent DEAD/H RNA helicase. (922 aa)
	NEQG_00538	PUM-HD domain-containing protein. (461 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	NEQG_00239	I3EIU8	I3EJS2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM14 domain-containing protein.	0.466
LSM4	NEQG_00438	I3EIU8	I3EKC1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.854
LSM4	NEQG_00980	I3EIU8	I3EIW4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.	0.495
LSM4	NEQG_01841	I3EIU8	I3EEX2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	NEQG_02245	I3EIU8	I3EEQ1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.803
LSM4	NEQG_02405	I3EIU8	I3EE77	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
NEQG_00063	NEQG_00438	I3EJ96	I3EKC1	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.454
NEQG_00066	NEQG_00448	I3EJ99	I3EKD1	Uncharacterized protein.	ATP-dependent DEAD/H RNA helicase.	0.448
NEQG_00066	NEQG_00899	I3EJ99	I3EIN3	Uncharacterized protein.	CCR4-NOT transcription complex subunit 7.	0.993
NEQG_00066	NEQG_01260	I3EJ99	I3EH73	Uncharacterized protein.	Uncharacterized protein.	0.996
NEQG_00066	NEQG_01642	I3EJ99	I3EG51	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.975
NEQG_00066	NEQG_02013	I3EJ99	I3EFE4	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.994
NEQG_00239	LSM4	I3EJS2	I3EIU8	LSM14 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.466
NEQG_00239	NEQG_00438	I3EJS2	I3EKC1	LSM14 domain-containing protein.	Nudix hydrolase domain-containing protein.	0.794
NEQG_00239	NEQG_00874	I3EJS2	I3EIK8	LSM14 domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.538
NEQG_00239	NEQG_00980	I3EJS2	I3EIW4	LSM14 domain-containing protein.	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.	0.500
NEQG_00239	NEQG_01260	I3EJS2	I3EH73	LSM14 domain-containing protein.	Uncharacterized protein.	0.467
NEQG_00239	NEQG_02245	I3EJS2	I3EEQ1	LSM14 domain-containing protein.	Uncharacterized protein.	0.784
NEQG_00239	NEQG_02405	I3EJS2	I3EE77	LSM14 domain-containing protein.	Sm domain-containing protein.	0.644
NEQG_00271	NEQG_00438	I3EJV4	I3EKC1	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.509