(15 nodes) Small ribosomal subunit network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_01296	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (177 aa)
	NEQG_01281	30S ribosomal protein S10p/S20e. (120 aa)
	NEQG_01207	Uncharacterized protein. (243 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	NEQG_02069	40s ribosomal protein s23; Belongs to the universal ribosomal protein uS12 family. (140 aa)
	NEQG_01832	30S ribosomal protein S7. (196 aa)
	NEQG_02103	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	NEQG_00276	30S ribosomal protein S28e. (67 aa)
	NEQG_00361	Ribosomal_L7Ae domain-containing protein. (132 aa)
	NEQG_00562	30S ribosomal protein S19e. (147 aa)
	NEQG_00270	Ribosomal_S3_C domain-containing protein. (244 aa)
	NEQG_00999	WD_REPEATS_REGION domain-containing protein. (321 aa)
	NEQG_00986	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (118 aa)
	NEQG_00685	30S ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (146 aa)
	NEQG_01428	30S ribosomal protein S4. (187 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00270	NEQG_00276	I3EJV3	I3EJV9	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S28e.	0.999
NEQG_00270	NEQG_00361	I3EJV3	I3EK44	Ribosomal_S3_C domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
NEQG_00270	NEQG_00562	I3EJV3	I3EKP5	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S19e.	0.999
NEQG_00270	NEQG_00685	I3EJV3	I3EI19	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.999
NEQG_00270	NEQG_00986	I3EJV3	I3EIX0	Ribosomal_S3_C domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
NEQG_00270	NEQG_00999	I3EJV3	I3EIY3	Ribosomal_S3_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
NEQG_00270	NEQG_01207	I3EJV3	I3EH20	Ribosomal_S3_C domain-containing protein.	Uncharacterized protein.	0.999
NEQG_00270	NEQG_01281	I3EJV3	I3EH94	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S10p/S20e.	0.999
NEQG_00270	NEQG_01296	I3EJV3	I3EHA9	Ribosomal_S3_C domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
NEQG_00270	NEQG_01428	I3EJV3	I3EHP1	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S4.	0.999
NEQG_00270	NEQG_01832	I3EJV3	I3EEW3	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S7.	0.999
NEQG_00270	NEQG_02069	I3EJV3	I3EFK0	Ribosomal_S3_C domain-containing protein.	40s ribosomal protein s23; Belongs to the universal ribosomal protein uS12 family.	0.999
NEQG_00270	NEQG_02103	I3EJV3	I3EEA9	Ribosomal_S3_C domain-containing protein.	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
NEQG_00270	RPS1	I3EJV3	I3EGQ2	Ribosomal_S3_C domain-containing protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
NEQG_00276	NEQG_00270	I3EJV9	I3EJV3	30S ribosomal protein S28e.	Ribosomal_S3_C domain-containing protein.	0.999
NEQG_00276	NEQG_00361	I3EJV9	I3EK44	30S ribosomal protein S28e.	Ribosomal_L7Ae domain-containing protein.	0.999
NEQG_00276	NEQG_00562	I3EJV9	I3EKP5	30S ribosomal protein S28e.	30S ribosomal protein S19e.	0.999
NEQG_00276	NEQG_00685	I3EJV9	I3EI19	30S ribosomal protein S28e.	30S ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.999
NEQG_00276	NEQG_00986	I3EJV9	I3EIX0	30S ribosomal protein S28e.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
NEQG_00276	NEQG_00999	I3EJV9	I3EIY3	30S ribosomal protein S28e.	WD_REPEATS_REGION domain-containing protein.	0.994