(54 nodes) mRNA metabolic process network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_00066	Uncharacterized protein. (270 aa)
	NEQG_01912	RNA helicase. (495 aa)
	NEQG_02013	NOT2_3_5 domain-containing protein. (387 aa)
	NEQG_02024	ATP dependent helicase. (635 aa)
	NEQG_02068	mRNA cap 0 methyltransferase domain-containing protein. (279 aa)
	NEQG_01526	RNase_PH domain-containing protein. (213 aa)
	NEQG_01627	RPOL4c domain-containing protein. (116 aa)
	NEQG_01642	NOT2_3_5 domain-containing protein. (139 aa)
	NEQG_01686	Zinc finger protein. (159 aa)
	NEQG_02608	Nuclear cap-binding protein subunit 2. (149 aa)
	NEQG_02489	RRM domain-containing protein. (275 aa)
	NEQG_02392	Uncharacterized protein. (124 aa)
	NEQG_02405	Sm domain-containing protein. (105 aa)
	NEQG_02108	SH2 domain-containing protein. (926 aa)
	NEQG_02137	RRM domain-containing protein. (251 aa)
	NEQG_02205	Uncharacterized protein. (382 aa)
	NEQG_01841	Sm domain-containing protein. (114 aa)
	NEQG_01840	tRNA pseudouridine synthase. (326 aa)
	NEQG_02245	Uncharacterized protein. (143 aa)
	NEQG_02244	RRM_2 domain-containing protein. (277 aa)
	NEQG_01730	DUF862 domain-containing protein. (145 aa)
	NEQG_01054	Symplekin_C domain-containing protein. (596 aa)
	NEQG_01058	Uncharacterized protein. (190 aa)
	NEQG_01227	PINc domain-containing protein. (251 aa)
	NEQG_01275	CPSF_A domain-containing protein. (1261 aa)
	NEQG_01376	Uncharacterized protein. (295 aa)
	NEQG_01403	TFIIS-type domain-containing protein. (94 aa)
	NEQG_00623	Sm domain-containing protein. (91 aa)
	NEQG_00652	Uncharacterized protein. (762 aa)
	NEQG_00687	RRM domain-containing protein. (211 aa)
	NEQG_00739	Uncharacterized protein. (263 aa)
	NEQG_00816	C2H2-type domain-containing protein. (465 aa)
	NEQG_00874	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (211 aa)
	NEQG_00882	Sm domain-containing protein. (94 aa)
	NEQG_00899	CCR4-NOT transcription complex subunit 7. (262 aa)
	NEQG_00950	Uncharacterized protein. (209 aa)
	NEQG_00954	RRM domain-containing protein. (233 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
	NEQG_00980	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family. (511 aa)
	NEQG_01007	Uncharacterized protein. (482 aa)
	NEQG_00055	Uncharacterized protein. (1613 aa)
	NEQG_00063	Uncharacterized protein. (285 aa)
	NEQG_01852	mRNA capping enzyme. (233 aa)
	NEQG_00137	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (506 aa)
	NEQG_00184	WD_REPEATS_REGION domain-containing protein. (394 aa)
	NEQG_00213	C2H2-type domain-containing protein. (313 aa)
	NEQG_00271	Uncharacterized protein. (267 aa)
	NEQG_00274	IRE protein kinase. (677 aa)
	NEQG_00375	eRF1_1 domain-containing protein. (349 aa)
	NEQG_00438	Nudix hydrolase domain-containing protein. (242 aa)
	NEQG_00448	ATP-dependent DEAD/H RNA helicase. (922 aa)
	NEQG_00495	Cleavage and polyadenylation specificity factor subunit 2. (744 aa)
	NEQG_00538	PUM-HD domain-containing protein. (461 aa)
	NEQG_00554	Cleavage and polyadenylation specificity factor 3. (696 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	NEQG_00055	I3EIU8	I3EJ88	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.782
LSM4	NEQG_00438	I3EIU8	I3EKC1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.854
LSM4	NEQG_00623	I3EIU8	I3EHV7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.962
LSM4	NEQG_00687	I3EIU8	I3EI21	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.453
LSM4	NEQG_00816	I3EIU8	I3EIF0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	C2H2-type domain-containing protein.	0.618
LSM4	NEQG_00882	I3EIU8	I3EIL6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	NEQG_00980	I3EIU8	I3EIW4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.	0.495
LSM4	NEQG_01058	I3EIU8	I3EGM1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.455
LSM4	NEQG_01841	I3EIU8	I3EEX2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	NEQG_01912	I3EIU8	I3EF43	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA helicase.	0.829
LSM4	NEQG_02245	I3EIU8	I3EEQ1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.803
LSM4	NEQG_02392	I3EIU8	I3EE64	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.448
LSM4	NEQG_02405	I3EIU8	I3EE77	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	NEQG_02608	I3EIU8	I3EDH6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nuclear cap-binding protein subunit 2.	0.628
NEQG_00055	LSM4	I3EJ88	I3EIU8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.782
NEQG_00055	NEQG_00623	I3EJ88	I3EHV7	Uncharacterized protein.	Sm domain-containing protein.	0.987
NEQG_00055	NEQG_00652	I3EJ88	I3EHY6	Uncharacterized protein.	Uncharacterized protein.	0.979
NEQG_00055	NEQG_00687	I3EJ88	I3EI21	Uncharacterized protein.	RRM domain-containing protein.	0.512
NEQG_00055	NEQG_00816	I3EJ88	I3EIF0	Uncharacterized protein.	C2H2-type domain-containing protein.	0.999
NEQG_00055	NEQG_00882	I3EJ88	I3EIL6	Uncharacterized protein.	Sm domain-containing protein.	0.850