(29 nodes) Protein-containing complex binding network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_01198	Uncharacterized protein. (466 aa)
	NEQG_00470	AAA domain-containing protein; Belongs to the AAA ATPase family. (356 aa)
	NEQG_00365	WD_REPEATS_REGION domain-containing protein. (385 aa)
	NEQG_00249	Calponin-homology (CH) domain-containing protein. (876 aa)
	NEQG_00200	Uncharacterized protein. (514 aa)
	NEQG_00146	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (495 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. (242 aa)
	NEQG_00999	WD_REPEATS_REGION domain-containing protein. (321 aa)
	NEQG_00956	Transcription activator. (638 aa)
	NEQG_00860	Uncharacterized protein. (99 aa)
	NEQG_00671	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (710 aa)
	NEQG_01431	WD_REPEATS_REGION domain-containing protein. (365 aa)
	NEQG_01386	RING-type domain-containing protein. (1069 aa)
	NEQG_01164	Uncharacterized protein. (966 aa)
	NEQG_01157	Uncharacterized protein. (89 aa)
	NEQG_01732	Uncharacterized protein. (807 aa)
	NEQG_01708	Uncharacterized protein. (958 aa)
	NEQG_01687	J domain-containing protein. (314 aa)
	NEQG_01651	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (299 aa)
	NEQG_01601	Calponin-homology (CH) domain-containing protein. (173 aa)
	NEQG_01563	SRP54 domain-containing protein. (441 aa)
	NEQG_01511	DHR10 domain-containing protein. (429 aa)
	NEQG_01493	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1466 aa)
	NEQG_02273	Uncharacterized protein. (700 aa)
	NEQG_02199	Preprotein translocase; Belongs to the SecY/SEC61-alpha family. (468 aa)
	NEQG_02108	SH2 domain-containing protein. (926 aa)
	NEQG_02342	Tub domain-containing protein; Belongs to the TUB family. (242 aa)
	NEQG_02496	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1478 aa)
	NEQG_02604	Rtt106 domain-containing protein. (490 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00146	NEQG_00200	I3EJH9	I3EJN3	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Uncharacterized protein.	0.783
NEQG_00146	NEQG_00470	I3EJH9	I3EKF3	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.509
NEQG_00146	NEQG_01198	I3EJH9	I3EH11	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Uncharacterized protein.	0.783
NEQG_00146	TIF6	I3EJH9	I3EJC7	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.	0.941
NEQG_00200	NEQG_00146	I3EJN3	I3EJH9	Uncharacterized protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.783
NEQG_00200	NEQG_00365	I3EJN3	I3EK48	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.556
NEQG_00200	NEQG_00470	I3EJN3	I3EKF3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.752
NEQG_00200	NEQG_01164	I3EJN3	I3EGX7	Uncharacterized protein.	Uncharacterized protein.	0.556
NEQG_00200	NEQG_01198	I3EJN3	I3EH11	Uncharacterized protein.	Uncharacterized protein.	0.999
NEQG_00200	NEQG_01431	I3EJN3	I3EHP4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.556
NEQG_00200	TIF6	I3EJN3	I3EJC7	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.	0.894
NEQG_00249	NEQG_01493	I3EJT2	I3EFQ2	Calponin-homology (CH) domain-containing protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.455
NEQG_00249	NEQG_02496	I3EJT2	I3EDS6	Calponin-homology (CH) domain-containing protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.800
NEQG_00365	NEQG_00200	I3EK48	I3EJN3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.556
NEQG_00365	NEQG_00671	I3EK48	I3EI05	WD_REPEATS_REGION domain-containing protein.	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.508
NEQG_00365	NEQG_00956	I3EK48	I3EIU0	WD_REPEATS_REGION domain-containing protein.	Transcription activator.	0.479
NEQG_00365	NEQG_00999	I3EK48	I3EIY3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.536
NEQG_00365	NEQG_01198	I3EK48	I3EH11	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.479
NEQG_00365	NEQG_01431	I3EK48	I3EHP4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.882
NEQG_00365	NEQG_01511	I3EK48	I3EFS0	WD_REPEATS_REGION domain-containing protein.	DHR10 domain-containing protein.	0.607