(23 nodes) Positive regulation of transcription, DNA-templated network (Nematocida parisii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_00488	Uncharacterized protein. (802 aa)
	NEQG_01829	Homeobox domain-containing protein. (170 aa)
	NEQG_02113	MADS-box domain-containing protein. (348 aa)
	NEQG_02108	SH2 domain-containing protein. (926 aa)
	NEQG_02327	Uncharacterized protein. (339 aa)
	NEQG_02497	SANT domain-containing protein. (368 aa)
	NEQG_02555	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (85 aa)
	NEQG_01112	Uncharacterized protein; Belongs to the actin family. (607 aa)
	NEQG_01153	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (114 aa)
	NEQG_01724	Forkhead transcription factor. (217 aa)
	NEQG_01651	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (299 aa)
	NEQG_01572	Ccaat binding transcription factor subunit A. (117 aa)
	NEQG_01891	TPR_REGION domain-containing protein. (553 aa)
	NEQG_01154	Uncharacterized protein. (1034 aa)
	NEQG_01224	SCA7 domain-containing protein. (197 aa)
	NEQG_01291	Uncharacterized protein. (352 aa)
	NEQG_00732	Uncharacterized protein. (276 aa)
	NEQG_00993	GATA-type domain-containing protein. (122 aa)
	NEQG_00066	Uncharacterized protein. (270 aa)
	NEQG_00104	Forkhead transcription factor. (179 aa)
	NEQG_00169	CMGC/CDK/CDK7 protein kinase. (329 aa)
	NEQG_00279	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (400 aa)
	NEQG_00555	MYB domain-containing protein. (250 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00104	NEQG_00279	I3EJD7	I3EJW2	Forkhead transcription factor.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.430
NEQG_00104	NEQG_00993	I3EJD7	I3EIX7	Forkhead transcription factor.	GATA-type domain-containing protein.	0.576
NEQG_00104	NEQG_02113	I3EJD7	I3EEB9	Forkhead transcription factor.	MADS-box domain-containing protein.	0.520
NEQG_00169	NEQG_01153	I3EJK2	I3EGW6	CMGC/CDK/CDK7 protein kinase.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.756
NEQG_00169	NEQG_01651	I3EJK2	I3EG60	CMGC/CDK/CDK7 protein kinase.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.724
NEQG_00279	NEQG_00104	I3EJW2	I3EJD7	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Forkhead transcription factor.	0.430
NEQG_00279	NEQG_00488	I3EJW2	I3EKH1	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.412
NEQG_00279	NEQG_01724	I3EJW2	I3EGD3	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Forkhead transcription factor.	0.430
NEQG_00279	NEQG_02327	I3EJW2	I3EDZ9	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.412
NEQG_00488	NEQG_00279	I3EKH1	I3EJW2	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.412
NEQG_00732	NEQG_01154	I3EI66	I3EGW7	Uncharacterized protein.	Uncharacterized protein.	0.460
NEQG_00993	NEQG_00104	I3EIX7	I3EJD7	GATA-type domain-containing protein.	Forkhead transcription factor.	0.576
NEQG_00993	NEQG_01572	I3EIX7	I3EFY1	GATA-type domain-containing protein.	Ccaat binding transcription factor subunit A.	0.536
NEQG_00993	NEQG_01724	I3EIX7	I3EGD3	GATA-type domain-containing protein.	Forkhead transcription factor.	0.615
NEQG_00993	NEQG_02113	I3EIX7	I3EEB9	GATA-type domain-containing protein.	MADS-box domain-containing protein.	0.765
NEQG_01112	NEQG_01891	I3EGS5	I3EF22	Uncharacterized protein; Belongs to the actin family.	TPR_REGION domain-containing protein.	0.545
NEQG_01153	NEQG_00169	I3EGW6	I3EJK2	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	CMGC/CDK/CDK7 protein kinase.	0.756
NEQG_01153	NEQG_01651	I3EGW6	I3EG60	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.564
NEQG_01153	NEQG_01891	I3EGW6	I3EF22	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	TPR_REGION domain-containing protein.	0.645
NEQG_01153	NEQG_02108	I3EGW6	I3EEB4	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	SH2 domain-containing protein.	0.889