(8 nodes) SAGA-type complex network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_01556	TFIID_20kDa domain-containing protein. (201 aa)
	NEQG_02497	SANT domain-containing protein. (368 aa)
	NEQG_02351	Uncharacterized protein. (258 aa)
	NEQG_02397	USP domain-containing protein; Belongs to the peptidase C19 family. (401 aa)
	NEQG_00212	Uncharacterized protein. (445 aa)
	NEQG_01033	Bromo domain-containing protein. (459 aa)
	NEQG_00845	Transcription initiation factor TFIID 70kda subunit. (381 aa)
	NEQG_01224	SCA7 domain-containing protein. (197 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00212	NEQG_00845	I3EJP5	I3EIH9	Uncharacterized protein.	Transcription initiation factor TFIID 70kda subunit.	0.651
NEQG_00212	NEQG_01033	I3EJP5	I3EJ17	Uncharacterized protein.	Bromo domain-containing protein.	0.510
NEQG_00212	NEQG_01224	I3EJP5	I3EH37	Uncharacterized protein.	SCA7 domain-containing protein.	0.838
NEQG_00212	NEQG_01556	I3EJP5	I3EFW5	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.467
NEQG_00212	NEQG_02351	I3EJP5	I3EE23	Uncharacterized protein.	Uncharacterized protein.	0.939
NEQG_00212	NEQG_02397	I3EJP5	I3EE69	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.743
NEQG_00212	NEQG_02497	I3EJP5	I3EDS7	Uncharacterized protein.	SANT domain-containing protein.	0.628
NEQG_00845	NEQG_00212	I3EIH9	I3EJP5	Transcription initiation factor TFIID 70kda subunit.	Uncharacterized protein.	0.651
NEQG_00845	NEQG_01033	I3EIH9	I3EJ17	Transcription initiation factor TFIID 70kda subunit.	Bromo domain-containing protein.	0.991
NEQG_00845	NEQG_01224	I3EIH9	I3EH37	Transcription initiation factor TFIID 70kda subunit.	SCA7 domain-containing protein.	0.992
NEQG_00845	NEQG_01556	I3EIH9	I3EFW5	Transcription initiation factor TFIID 70kda subunit.	TFIID_20kDa domain-containing protein.	0.999
NEQG_00845	NEQG_02351	I3EIH9	I3EE23	Transcription initiation factor TFIID 70kda subunit.	Uncharacterized protein.	0.986
NEQG_00845	NEQG_02397	I3EIH9	I3EE69	Transcription initiation factor TFIID 70kda subunit.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.811
NEQG_00845	NEQG_02497	I3EIH9	I3EDS7	Transcription initiation factor TFIID 70kda subunit.	SANT domain-containing protein.	0.877
NEQG_01033	NEQG_00212	I3EJ17	I3EJP5	Bromo domain-containing protein.	Uncharacterized protein.	0.510
NEQG_01033	NEQG_00845	I3EJ17	I3EIH9	Bromo domain-containing protein.	Transcription initiation factor TFIID 70kda subunit.	0.991
NEQG_01033	NEQG_01224	I3EJ17	I3EH37	Bromo domain-containing protein.	SCA7 domain-containing protein.	0.994
NEQG_01033	NEQG_01556	I3EJ17	I3EFW5	Bromo domain-containing protein.	TFIID_20kDa domain-containing protein.	0.736
NEQG_01033	NEQG_02351	I3EJ17	I3EE23	Bromo domain-containing protein.	Uncharacterized protein.	0.989
NEQG_01033	NEQG_02397	I3EJ17	I3EE69	Bromo domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.986