(8 nodes) Bromodomain network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_02235	Uncharacterized protein. (614 aa)
	NEQG_02231	Uncharacterized protein. (1348 aa)
	NEQG_01033	Bromo domain-containing protein. (459 aa)
	NEQG_01024	Uncharacterized protein. (370 aa)
	NEQG_00825	Bromo domain-containing protein. (880 aa)
	NEQG_01409	Uncharacterized protein. (370 aa)
	NEQG_01164	Uncharacterized protein. (966 aa)
	NEQG_01154	Uncharacterized protein. (1034 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00825	NEQG_01024	I3EIF9	I3EJ08	Bromo domain-containing protein.	Uncharacterized protein.	0.659
NEQG_00825	NEQG_01164	I3EIF9	I3EGX7	Bromo domain-containing protein.	Uncharacterized protein.	0.659
NEQG_00825	NEQG_01409	I3EIF9	I3EHM2	Bromo domain-containing protein.	Uncharacterized protein.	0.405
NEQG_00825	NEQG_02231	I3EIF9	I3EEN7	Bromo domain-containing protein.	Uncharacterized protein.	0.999
NEQG_01024	NEQG_00825	I3EJ08	I3EIF9	Uncharacterized protein.	Bromo domain-containing protein.	0.659
NEQG_01024	NEQG_01154	I3EJ08	I3EGW7	Uncharacterized protein.	Uncharacterized protein.	0.457
NEQG_01024	NEQG_02231	I3EJ08	I3EEN7	Uncharacterized protein.	Uncharacterized protein.	0.432
NEQG_01033	NEQG_01154	I3EJ17	I3EGW7	Bromo domain-containing protein.	Uncharacterized protein.	0.442
NEQG_01033	NEQG_01164	I3EJ17	I3EGX7	Bromo domain-containing protein.	Uncharacterized protein.	0.449
NEQG_01033	NEQG_01409	I3EJ17	I3EHM2	Bromo domain-containing protein.	Uncharacterized protein.	0.898
NEQG_01154	NEQG_01024	I3EGW7	I3EJ08	Uncharacterized protein.	Uncharacterized protein.	0.457
NEQG_01154	NEQG_01033	I3EGW7	I3EJ17	Uncharacterized protein.	Bromo domain-containing protein.	0.442
NEQG_01154	NEQG_01164	I3EGW7	I3EGX7	Uncharacterized protein.	Uncharacterized protein.	0.999
NEQG_01154	NEQG_01409	I3EGW7	I3EHM2	Uncharacterized protein.	Uncharacterized protein.	0.621
NEQG_01164	NEQG_00825	I3EGX7	I3EIF9	Uncharacterized protein.	Bromo domain-containing protein.	0.659
NEQG_01164	NEQG_01033	I3EGX7	I3EJ17	Uncharacterized protein.	Bromo domain-containing protein.	0.449
NEQG_01164	NEQG_01154	I3EGX7	I3EGW7	Uncharacterized protein.	Uncharacterized protein.	0.999
NEQG_01164	NEQG_01409	I3EGX7	I3EHM2	Uncharacterized protein.	Uncharacterized protein.	0.449
NEQG_01164	NEQG_02231	I3EGX7	I3EEN7	Uncharacterized protein.	Uncharacterized protein.	0.652
NEQG_01409	NEQG_00825	I3EHM2	I3EIF9	Uncharacterized protein.	Bromo domain-containing protein.	0.405