(8 nodes) SNF2-like, N-terminal domain superfamily network (Nematocida parisii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEQG_00727	Uncharacterized protein. (582 aa)
	NEQG_00956	Transcription activator. (638 aa)
	NEQG_02579	Uncharacterized protein. (576 aa)
	NEQG_02384	Uncharacterized protein. (507 aa)
	NEQG_01477	Uncharacterized protein. (860 aa)
	NEQG_01685	Helicase DNA-binding protein. (1336 aa)
	NEQG_01154	Uncharacterized protein. (1034 aa)
	NEQG_01432	Transcription regulator. (1378 aa)

Your Current Organism:

Nematocida parisii

NCBI taxonomy Id: 935791
Other names: N. parisii ERTm3, Nematocida parisii ERTm3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEQG_00727	NEQG_01154	I3EI61	I3EGW7	Uncharacterized protein.	Uncharacterized protein.	0.452
NEQG_00956	NEQG_01154	I3EIU0	I3EGW7	Transcription activator.	Uncharacterized protein.	0.569
NEQG_00956	NEQG_01432	I3EIU0	I3EHP5	Transcription activator.	Transcription regulator.	0.520
NEQG_00956	NEQG_01685	I3EIU0	I3EG94	Transcription activator.	Helicase DNA-binding protein.	0.547
NEQG_00956	NEQG_02384	I3EIU0	I3EE56	Transcription activator.	Uncharacterized protein.	0.607
NEQG_00956	NEQG_02579	I3EIU0	I3EDE7	Transcription activator.	Uncharacterized protein.	0.576
NEQG_01154	NEQG_00727	I3EGW7	I3EI61	Uncharacterized protein.	Uncharacterized protein.	0.452
NEQG_01154	NEQG_00956	I3EGW7	I3EIU0	Uncharacterized protein.	Transcription activator.	0.569
NEQG_01154	NEQG_01432	I3EGW7	I3EHP5	Uncharacterized protein.	Transcription regulator.	0.490
NEQG_01154	NEQG_01477	I3EGW7	I3EFN6	Uncharacterized protein.	Uncharacterized protein.	0.460
NEQG_01154	NEQG_01685	I3EGW7	I3EG94	Uncharacterized protein.	Helicase DNA-binding protein.	0.504
NEQG_01154	NEQG_02384	I3EGW7	I3EE56	Uncharacterized protein.	Uncharacterized protein.	0.434
NEQG_01154	NEQG_02579	I3EGW7	I3EDE7	Uncharacterized protein.	Uncharacterized protein.	0.549
NEQG_01432	NEQG_00956	I3EHP5	I3EIU0	Transcription regulator.	Transcription activator.	0.520
NEQG_01432	NEQG_01154	I3EHP5	I3EGW7	Transcription regulator.	Uncharacterized protein.	0.490
NEQG_01432	NEQG_01477	I3EHP5	I3EFN6	Transcription regulator.	Uncharacterized protein.	0.403
NEQG_01432	NEQG_01685	I3EHP5	I3EG94	Transcription regulator.	Helicase DNA-binding protein.	0.406
NEQG_01432	NEQG_02579	I3EHP5	I3EDE7	Transcription regulator.	Uncharacterized protein.	0.444
NEQG_01477	NEQG_01154	I3EFN6	I3EGW7	Uncharacterized protein.	Uncharacterized protein.	0.460
NEQG_01477	NEQG_01432	I3EFN6	I3EHP5	Uncharacterized protein.	Transcription regulator.	0.403