(12 nodes) Methylguanosine-cap decapping, and NADHX epimerase activity network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_005817	Uncharacterized protein. (97 aa)
	CVT25_011042	Uncharacterized protein. (502 aa)
	CVT25_011231	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1374 aa)
	CVT25_011793	WD_REPEATS_REGION domain-containing protein. (1434 aa)
	CVT25_002802	Uncharacterized protein. (423 aa)
	CVT25_003684	Uncharacterized protein. (447 aa)
	CVT25_001954	Nudix hydrolase domain-containing protein. (737 aa)
	CVT25_006798	Uncharacterized protein; Belongs to the DEAD box helicase family. (496 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (116 aa)
	CVT25_009468	Uncharacterized protein. (1020 aa)
	CVT25_012618	Uncharacterized protein. (194 aa)
	CVT25_008134	Uncharacterized protein. (776 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_001954	CVT25_002802	A0A409WQR6	A0A409WKX7	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.894
CVT25_001954	CVT25_005817	A0A409WQR6	A0A409VV56	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.894
CVT25_001954	CVT25_006798	A0A409WQR6	A0A409X7D3	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.957
CVT25_001954	CVT25_008134	A0A409WQR6	A0A409XSS2	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.970
CVT25_001954	CVT25_009468	A0A409WQR6	A0A409XDB1	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.969
CVT25_001954	CVT25_011042	A0A409WQR6	A0A409WFB5	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.835
CVT25_001954	CVT25_011231	A0A409WQR6	A0A409WGR1	Nudix hydrolase domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.946
CVT25_001954	CVT25_011793	A0A409WQR6	A0A409WJ75	Nudix hydrolase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.954
CVT25_001954	LSM1	A0A409WQR6	A0A409XD12	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.921
CVT25_002802	CVT25_001954	A0A409WKX7	A0A409WQR6	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.894
CVT25_002802	CVT25_003684	A0A409WKX7	A0A409WP58	Uncharacterized protein.	Uncharacterized protein.	0.894
CVT25_002802	CVT25_006798	A0A409WKX7	A0A409X7D3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.952
CVT25_002802	CVT25_008134	A0A409WKX7	A0A409XSS2	Uncharacterized protein.	Uncharacterized protein.	0.952
CVT25_002802	CVT25_009468	A0A409WKX7	A0A409XDB1	Uncharacterized protein.	Uncharacterized protein.	0.913
CVT25_002802	CVT25_011042	A0A409WKX7	A0A409WFB5	Uncharacterized protein.	Uncharacterized protein.	0.761
CVT25_002802	CVT25_011231	A0A409WKX7	A0A409WGR1	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.736
CVT25_002802	CVT25_011793	A0A409WKX7	A0A409WJ75	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.884
CVT25_002802	CVT25_012618	A0A409WKX7	A0A409XJ74	Uncharacterized protein.	Uncharacterized protein.	0.894
CVT25_002802	LSM1	A0A409WKX7	A0A409XD12	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.811
CVT25_003684	CVT25_002802	A0A409WP58	A0A409WKX7	Uncharacterized protein.	Uncharacterized protein.	0.894