STRINGSTRING
CVT25_003012 CVT25_003012 CVT25_011231 CVT25_011231 CVT25_011386 CVT25_011386 CVT25_001114 CVT25_001114 CVT25_001108 CVT25_001108 CVT25_008134 CVT25_008134 PRT1 PRT1 CVT25_001356 CVT25_001356 CVT25_009061 CVT25_009061 CVT25_006798 CVT25_006798 CVT25_009468 CVT25_009468 CVT25_010192 CVT25_010192 CVT25_001045 CVT25_001045 CVT25_008172 CVT25_008172 CVT25_003103 CVT25_003103
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CVT25_003012RRM_2 domain-containing protein. (924 aa)
CVT25_0112315'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1374 aa)
CVT25_011386eRF1_1 domain-containing protein. (439 aa)
CVT25_001114Uncharacterized protein; Belongs to the DEAD box helicase family. (463 aa)
CVT25_001108LsmAD domain-containing protein. (925 aa)
CVT25_008134Uncharacterized protein. (776 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (729 aa)
CVT25_001356HTH La-type RNA-binding domain-containing protein. (1498 aa)
CVT25_009061Uncharacterized protein. (381 aa)
CVT25_006798Uncharacterized protein; Belongs to the DEAD box helicase family. (496 aa)
CVT25_009468Uncharacterized protein. (1020 aa)
CVT25_010192Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (802 aa)
CVT25_001045Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (689 aa)
CVT25_008172MI domain-containing protein. (1549 aa)
CVT25_003103Uncharacterized protein. (444 aa)
Your Current Organism:
Psilocybe cyanescens
NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481
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