(23 nodes) snRNA metabolic process network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_011181	Uncharacterized protein. (738 aa)
	CVT25_015323	Uncharacterized protein. (282 aa)
	CVT25_015599	Uncharacterized protein. (300 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (314 aa)
	CVT25_006120	RNase_PH domain-containing protein. (266 aa)
	CVT25_012071	Uncharacterized protein. (323 aa)
	CVT25_002512	Uncharacterized protein. (334 aa)
	CVT25_007463	Uncharacterized protein. (310 aa)
	CVT25_013941	RNase_PH domain-containing protein. (262 aa)
	CVT25_014956	Uncharacterized protein. (1085 aa)
	CVT25_012202	Uncharacterized protein. (405 aa)
	CVT25_013086	RNase_PH domain-containing protein. (339 aa)
	CVT25_007303	Uncharacterized protein. (103 aa)
	CVT25_012604	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (205 aa)
	CVT25_006500	Bin3-type SAM domain-containing protein. (285 aa)
	CVT25_002197	PUA domain-containing protein. (514 aa)
	CVT25_009987	Uncharacterized protein. (82 aa)
	CVT25_004316	Uncharacterized protein. (233 aa)
	CVT25_000184	Exonuclease domain-containing protein. (649 aa)
	CVT25_005526	Uncharacterized protein. (589 aa)
	CVT25_012840	HRDC domain-containing protein. (891 aa)
	CVT25_014855	Uncharacterized protein. (330 aa)
	CVT25_010998	TRUD domain-containing protein. (858 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_000184	CVT25_005526	A0A409XQ90	A0A409VQY9	Exonuclease domain-containing protein.	Uncharacterized protein.	0.502
CVT25_000184	CVT25_006120	A0A409XQ90	A0A409WZ02	Exonuclease domain-containing protein.	RNase_PH domain-containing protein.	0.491
CVT25_000184	CVT25_013941	A0A409XQ90	A0A409XJW9	Exonuclease domain-containing protein.	RNase_PH domain-containing protein.	0.491
CVT25_000184	CVT25_014855	A0A409XQ90	A0A409WER3	Exonuclease domain-containing protein.	Uncharacterized protein.	0.689
CVT25_002197	CVT25_005526	A0A409XF11	A0A409VQY9	PUA domain-containing protein.	Uncharacterized protein.	0.412
CVT25_002197	CVT25_010998	A0A409XF11	A0A409WFY0	PUA domain-containing protein.	TRUD domain-containing protein.	0.623
CVT25_002197	CVT25_012604	A0A409XF11	A0A409X817	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
CVT25_002512	CVT25_004316	A0A409XUQ1	A0A409XQ08	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT25_002512	CVT25_006120	A0A409XUQ1	A0A409WZ02	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_007463	A0A409XUQ1	A0A409XVP3	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_002512	CVT25_012840	A0A409XUQ1	A0A409VRC1	Uncharacterized protein.	HRDC domain-containing protein.	0.629
CVT25_002512	CVT25_013086	A0A409XUQ1	A0A409XHQ0	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_013941	A0A409XUQ1	A0A409XJW9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_014855	A0A409XUQ1	A0A409WER3	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_002512	CVT25_014956	A0A409XUQ1	A0A409XI56	Uncharacterized protein.	Uncharacterized protein.	0.787
CVT25_002512	CVT25_015323	A0A409XUQ1	A0A409WH55	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_004316	CVT25_002512	A0A409XQ08	A0A409XUQ1	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT25_004316	CVT25_006120	A0A409XQ08	A0A409WZ02	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_004316	CVT25_007463	A0A409XQ08	A0A409XVP3	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT25_004316	CVT25_012840	A0A409XQ08	A0A409VRC1	Uncharacterized protein.	HRDC domain-containing protein.	0.600