(50 nodes) rRNA binding network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_001224	Uncharacterized protein. (169 aa)
	CVT25_002594	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CVT25_008746	XRN_N domain-containing protein. (159 aa)
	CVT25_008720	Brix domain-containing protein. (302 aa)
	CVT25_004870	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (127 aa)
	CVT25_013717	Brix domain-containing protein. (362 aa)
	CVT25_010153	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (242 aa)
	CVT25_012346	Uncharacterized protein. (282 aa)
	CVT25_012246	Uncharacterized protein. (251 aa)
	CVT25_012237	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (156 aa)
	CVT25_012164	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (164 aa)
	CVT25_006855	Ribosomal_L2_C domain-containing protein. (298 aa)
	CVT25_014070	Brix domain-containing protein. (840 aa)
	CVT25_009320	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (252 aa)
	CVT25_005706	Uncharacterized protein. (1465 aa)
	CVT25_005683	Uncharacterized protein. (132 aa)
	CVT25_005162	S4 RNA-binding domain-containing protein. (412 aa)
	CVT25_002640	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	CVT25_002371	Uncharacterized protein. (313 aa)
	CVT25_010720	Ribosomal_S7 domain-containing protein. (213 aa)
	CVT25_011808	Brix domain-containing protein. (436 aa)
	CVT25_011643	Brix domain-containing protein. (374 aa)
	CVT25_015639	DUF4477 domain-containing protein. (109 aa)
	CVT25_015598	Uncharacterized protein. (654 aa)
	CVT25_011161	Uncharacterized protein. (231 aa)
	CVT25_011108	Uncharacterized protein. (209 aa)
	CVT25_010892	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (148 aa)
	CVT25_009872	Ribosomal_L18_c domain-containing protein. (304 aa)
	CVT25_012939	Ribosomal_L2_C domain-containing protein. (219 aa)
	CVT25_012938	Ribosomal_L2_C domain-containing protein. (176 aa)
	CVT25_012841	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (160 aa)
	CVT25_006757	Uncharacterized protein. (361 aa)
	CVT25_009777	Uncharacterized protein. (423 aa)
	CVT25_000039	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	CVT25_010939	Uncharacterized protein. (162 aa)
	CVT25_010905	Uncharacterized protein. (180 aa)
	CVT25_010805	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	CVT25_000961	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (176 aa)
	CVT25_012496	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	CVT25_013499	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (567 aa)
	CVT25_008130	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (230 aa)
	CVT25_014553	S4 RNA-binding domain-containing protein. (183 aa)
	CVT25_001935	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (155 aa)
	CVT25_003033	Uncharacterized protein. (124 aa)
	CVT25_005553	Uncharacterized protein. (303 aa)
	CVT25_014603	Uncharacterized protein. (1104 aa)
	CVT25_004278	PPR2. (878 aa)
	CVT25_004625	Ribosomal_L2_C domain-containing protein. (185 aa)
	CVT25_006252	Uncharacterized protein. (406 aa)
	CVT25_012497	PlsC domain-containing protein. (679 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_000039	CVT25_000961	A0A409X8F0	A0A409VTJ8	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
CVT25_000039	CVT25_001224	A0A409X8F0	A0A409XKD9	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.999
CVT25_000039	CVT25_001935	A0A409X8F0	A0A409WQP7	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
CVT25_000039	CVT25_002594	A0A409X8F0	A0A409XR26	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
CVT25_000039	CVT25_002640	A0A409X8F0	A0A409WLN2	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
CVT25_000039	CVT25_003033	A0A409X8F0	A0A409WN88	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.967
CVT25_000039	CVT25_004625	A0A409X8F0	A0A409X2A2	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_L2_C domain-containing protein.	0.987
CVT25_000039	CVT25_005162	A0A409X8F0	A0A409XC05	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	S4 RNA-binding domain-containing protein.	0.970
CVT25_000039	CVT25_005553	A0A409X8F0	A0A409XS85	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.976
CVT25_000039	CVT25_005683	A0A409X8F0	A0A409VLD8	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.981
CVT25_000039	CVT25_005706	A0A409X8F0	A0A409VLG0	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.976
CVT25_000039	CVT25_006757	A0A409X8F0	A0A409X7E5	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.983
CVT25_000039	CVT25_006855	A0A409X8F0	A0A409XU31	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_L2_C domain-containing protein.	0.987
CVT25_000039	CVT25_008130	A0A409X8F0	A0A409XSR0	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.986
CVT25_000039	CVT25_009320	A0A409X8F0	A0A409VN82	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.990
CVT25_000039	CVT25_009777	A0A409X8F0	A0A409X881	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.994
CVT25_000039	CVT25_009872	A0A409X8F0	A0A409XTL7	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_L18_c domain-containing protein.	0.999
CVT25_000039	CVT25_010153	A0A409X8F0	A0A409XJ43	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
CVT25_000039	CVT25_010720	A0A409X8F0	A0A409WJN4	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_S7 domain-containing protein.	0.970
CVT25_000039	CVT25_010805	A0A409X8F0	A0A409WF68	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999