(6 nodes) CCR4-NOT core complex network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_011328	Uncharacterized protein. (1350 aa)
	CVT25_009376	Uncharacterized protein. (909 aa)
	CVT25_006613	Uncharacterized protein. (773 aa)
	CVT25_012293	Uncharacterized protein. (2109 aa)
	CVT25_005624	Uncharacterized protein. (351 aa)
	CVT25_003376	Uncharacterized protein. (758 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_003376	CVT25_005624	A0A409WLU3	A0A409X6A5	Uncharacterized protein.	Uncharacterized protein.	0.993
CVT25_003376	CVT25_006613	A0A409WLU3	A0A409XIQ4	Uncharacterized protein.	Uncharacterized protein.	0.984
CVT25_003376	CVT25_009376	A0A409WLU3	A0A409XV43	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_003376	CVT25_011328	A0A409WLU3	A0A409WGC7	Uncharacterized protein.	Uncharacterized protein.	0.988
CVT25_003376	CVT25_012293	A0A409WLU3	A0A409XHA0	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_005624	CVT25_003376	A0A409X6A5	A0A409WLU3	Uncharacterized protein.	Uncharacterized protein.	0.993
CVT25_005624	CVT25_006613	A0A409X6A5	A0A409XIQ4	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_005624	CVT25_009376	A0A409X6A5	A0A409XV43	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_005624	CVT25_011328	A0A409X6A5	A0A409WGC7	Uncharacterized protein.	Uncharacterized protein.	0.995
CVT25_005624	CVT25_012293	A0A409X6A5	A0A409XHA0	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_006613	CVT25_003376	A0A409XIQ4	A0A409WLU3	Uncharacterized protein.	Uncharacterized protein.	0.984
CVT25_006613	CVT25_005624	A0A409XIQ4	A0A409X6A5	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_006613	CVT25_009376	A0A409XIQ4	A0A409XV43	Uncharacterized protein.	Uncharacterized protein.	0.994
CVT25_006613	CVT25_011328	A0A409XIQ4	A0A409WGC7	Uncharacterized protein.	Uncharacterized protein.	0.991
CVT25_006613	CVT25_012293	A0A409XIQ4	A0A409XHA0	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_009376	CVT25_003376	A0A409XV43	A0A409WLU3	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_009376	CVT25_005624	A0A409XV43	A0A409X6A5	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_009376	CVT25_006613	A0A409XV43	A0A409XIQ4	Uncharacterized protein.	Uncharacterized protein.	0.994
CVT25_009376	CVT25_011328	A0A409XV43	A0A409WGC7	Uncharacterized protein.	Uncharacterized protein.	0.996
CVT25_009376	CVT25_012293	A0A409XV43	A0A409XHA0	Uncharacterized protein.	Uncharacterized protein.	0.998