(9 nodes) Nuclear-transcribed mRNA catabolic process, non-stop decay network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_003860	WD_REPEATS_REGION domain-containing protein. (298 aa)
	CVT25_008256	Uncharacterized protein. (1259 aa)
	CVT25_012210	Uncharacterized protein. (1446 aa)
	CVT25_006120	RNase_PH domain-containing protein. (266 aa)
	CVT25_015323	Uncharacterized protein. (282 aa)
	CVT25_011091	Photolyase/cryptochrome alpha/beta domain-containing protein. (1009 aa)
	CVT25_007463	Uncharacterized protein. (310 aa)
	CVT25_004933	Histone H2A; Belongs to the histone H2A family. (147 aa)
	CVT25_013941	RNase_PH domain-containing protein. (262 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_003860	CVT25_006120	A0A409XPW1	A0A409WZ02	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.782
CVT25_003860	CVT25_007463	A0A409XPW1	A0A409XVP3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.775
CVT25_003860	CVT25_008256	A0A409XPW1	A0A409XJK6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
CVT25_003860	CVT25_012210	A0A409XPW1	A0A409XFG0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
CVT25_003860	CVT25_013941	A0A409XPW1	A0A409XJW9	WD_REPEATS_REGION domain-containing protein.	RNase_PH domain-containing protein.	0.806
CVT25_003860	CVT25_015323	A0A409XPW1	A0A409WH55	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.775
CVT25_006120	CVT25_003860	A0A409WZ02	A0A409XPW1	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.782
CVT25_006120	CVT25_007463	A0A409WZ02	A0A409XVP3	RNase_PH domain-containing protein.	Uncharacterized protein.	0.998
CVT25_006120	CVT25_008256	A0A409WZ02	A0A409XJK6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.944
CVT25_006120	CVT25_012210	A0A409WZ02	A0A409XFG0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.854
CVT25_006120	CVT25_013941	A0A409WZ02	A0A409XJW9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
CVT25_006120	CVT25_015323	A0A409WZ02	A0A409WH55	RNase_PH domain-containing protein.	Uncharacterized protein.	0.998
CVT25_007463	CVT25_003860	A0A409XVP3	A0A409XPW1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.775
CVT25_007463	CVT25_006120	A0A409XVP3	A0A409WZ02	Uncharacterized protein.	RNase_PH domain-containing protein.	0.998
CVT25_007463	CVT25_008256	A0A409XVP3	A0A409XJK6	Uncharacterized protein.	Uncharacterized protein.	0.960
CVT25_007463	CVT25_012210	A0A409XVP3	A0A409XFG0	Uncharacterized protein.	Uncharacterized protein.	0.773
CVT25_007463	CVT25_013941	A0A409XVP3	A0A409XJW9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.998
CVT25_007463	CVT25_015323	A0A409XVP3	A0A409WH55	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT25_008256	CVT25_003860	A0A409XJK6	A0A409XPW1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
CVT25_008256	CVT25_006120	A0A409XJK6	A0A409WZ02	Uncharacterized protein.	RNase_PH domain-containing protein.	0.944