(41 nodes) Vesicle tethering complex network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_004119	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (798 aa)
	CVT25_008136	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1004 aa)
	CVT25_015255	Vps54 domain-containing protein. (1190 aa)
	CVT25_006147	Uncharacterized protein. (1044 aa)
	CVT25_005692	Sec8_exocyst domain-containing protein. (1258 aa)
	CVT25_006827	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (848 aa)
	CVT25_009776	Uncharacterized protein. (673 aa)
	CVT25_011460	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (926 aa)
	CVT25_007595	Uncharacterized protein. (235 aa)
	CVT25_012674	Uncharacterized protein. (1180 aa)
	CVT25_005985	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (242 aa)
	CVT25_011995	Vps53_N domain-containing protein. (842 aa)
	CVT25_007408	DUF1992 domain-containing protein. (507 aa)
	CVT25_004782	Uncharacterized protein. (1076 aa)
	CVT25_001375	Uncharacterized protein. (518 aa)
	CVT25_010146	Uncharacterized protein. (750 aa)
	CVT25_005670	Uncharacterized protein. (1096 aa)
	CVT25_003985	Uncharacterized protein. (1336 aa)
	CVT25_004051	E3 ubiquitin-protein ligase PEP5. (1087 aa)
	CVT25_003787	CNH domain-containing protein. (992 aa)
	CVT25_015932	Uncharacterized protein. (71 aa)
	CVT25_002919	Exo84_C domain-containing protein. (900 aa)
	CVT25_003434	Uncharacterized protein. (125 aa)
	CVT25_002816	Thioredoxin reductase. (338 aa)
	CVT25_010628	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family. (605 aa)
	CVT25_015478	Uncharacterized protein. (644 aa)
	CVT25_015490	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (136 aa)
	CVT25_010932	Uncharacterized protein. (593 aa)
	CVT25_010981	Uncharacterized protein. (865 aa)
	CVT25_011000	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (794 aa)
	CVT25_011032	Uncharacterized protein. (1219 aa)
	CVT25_014845	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (664 aa)
	CVT25_005850	Vps8 domain-containing protein. (1590 aa)
	CVT25_005649	Sec39 domain-containing protein. (1005 aa)
	CVT25_005735	Uncharacterized protein. (873 aa)
	CVT25_005694	Sec3-PIP2_bind domain-containing protein. (1077 aa)
	CVT25_003929	Uncharacterized protein. (163 aa)
	CVT25_005654	Uncharacterized protein. (843 aa)
	CVT25_007459	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family. (1030 aa)
	CVT25_012122	Uncharacterized protein. (236 aa)
	CVT25_000762	TPR_REGION domain-containing protein. (669 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_000762	CVT25_003434	A0A409XME1	A0A409WM38	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.952
CVT25_000762	CVT25_003929	A0A409XME1	A0A409XW20	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.975
CVT25_000762	CVT25_003985	A0A409XME1	A0A409WXX4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.905
CVT25_000762	CVT25_005985	A0A409XME1	A0A409VMG1	TPR_REGION domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.	0.959
CVT25_000762	CVT25_007595	A0A409XME1	A0A409VQ75	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.952
CVT25_000762	CVT25_012674	A0A409XME1	A0A409VN49	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.892
CVT25_000762	CVT25_015478	A0A409XME1	A0A409WI33	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.979
CVT25_000762	CVT25_015490	A0A409XME1	A0A409WI22	TPR_REGION domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.959
CVT25_001375	CVT25_002816	A0A409XHF7	A0A409WLB0	Uncharacterized protein.	Thioredoxin reductase.	0.953
CVT25_001375	CVT25_004119	A0A409XHF7	A0A409XKR1	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.785
CVT25_001375	CVT25_005735	A0A409XHF7	A0A409VLI9	Uncharacterized protein.	Uncharacterized protein.	0.714
CVT25_001375	CVT25_006147	A0A409XHF7	A0A409WYV7	Uncharacterized protein.	Uncharacterized protein.	0.724
CVT25_001375	CVT25_009776	A0A409XHF7	A0A409X8C7	Uncharacterized protein.	Uncharacterized protein.	0.785
CVT25_001375	CVT25_010932	A0A409XHF7	A0A409WFY2	Uncharacterized protein.	Uncharacterized protein.	0.972
CVT25_001375	CVT25_011000	A0A409XHF7	A0A409WFU7	Uncharacterized protein.	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.404
CVT25_001375	CVT25_011032	A0A409XHF7	A0A409WFA7	Uncharacterized protein.	Uncharacterized protein.	0.769
CVT25_001375	CVT25_011995	A0A409XHF7	A0A409XFA5	Uncharacterized protein.	Vps53_N domain-containing protein.	0.968
CVT25_001375	CVT25_012122	A0A409XHF7	A0A409XJ63	Uncharacterized protein.	Uncharacterized protein.	0.936
CVT25_001375	CVT25_015932	A0A409XHF7	A0A409WSF6	Uncharacterized protein.	Uncharacterized protein.	0.724
CVT25_002816	CVT25_001375	A0A409WLB0	A0A409XHF7	Thioredoxin reductase.	Uncharacterized protein.	0.953