(12 nodes) Exosome (RNase complex) network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_004889	Uncharacterized protein. (807 aa)
	CVT25_002224	S1 motif domain-containing protein. (911 aa)
	CVT25_013086	RNase_PH domain-containing protein. (339 aa)
	CVT25_013941	RNase_PH domain-containing protein. (262 aa)
	CVT25_004316	Uncharacterized protein. (233 aa)
	CVT25_002512	Uncharacterized protein. (334 aa)
	CVT25_007463	Uncharacterized protein. (310 aa)
	CVT25_011667	Uncharacterized protein; Belongs to the RNR ribonuclease family. (1006 aa)
	CVT25_005906	Tr-type G domain-containing protein. (633 aa)
	CVT25_012840	HRDC domain-containing protein. (891 aa)
	CVT25_015323	Uncharacterized protein. (282 aa)
	CVT25_006120	RNase_PH domain-containing protein. (266 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_002224	CVT25_002512	A0A409XF61	A0A409XUQ1	S1 motif domain-containing protein.	Uncharacterized protein.	0.998
CVT25_002224	CVT25_004316	A0A409XF61	A0A409XQ08	S1 motif domain-containing protein.	Uncharacterized protein.	0.999
CVT25_002224	CVT25_006120	A0A409XF61	A0A409WZ02	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.998
CVT25_002224	CVT25_007463	A0A409XF61	A0A409XVP3	S1 motif domain-containing protein.	Uncharacterized protein.	0.999
CVT25_002224	CVT25_011667	A0A409XF61	A0A409XWI1	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.976
CVT25_002224	CVT25_012840	A0A409XF61	A0A409VRC1	S1 motif domain-containing protein.	HRDC domain-containing protein.	0.594
CVT25_002224	CVT25_013086	A0A409XF61	A0A409XHQ0	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.999
CVT25_002224	CVT25_013941	A0A409XF61	A0A409XJW9	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.998
CVT25_002224	CVT25_015323	A0A409XF61	A0A409WH55	S1 motif domain-containing protein.	Uncharacterized protein.	0.998
CVT25_002512	CVT25_002224	A0A409XUQ1	A0A409XF61	Uncharacterized protein.	S1 motif domain-containing protein.	0.998
CVT25_002512	CVT25_004316	A0A409XUQ1	A0A409XQ08	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT25_002512	CVT25_006120	A0A409XUQ1	A0A409WZ02	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_007463	A0A409XUQ1	A0A409XVP3	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_002512	CVT25_011667	A0A409XUQ1	A0A409XWI1	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.998
CVT25_002512	CVT25_012840	A0A409XUQ1	A0A409VRC1	Uncharacterized protein.	HRDC domain-containing protein.	0.629
CVT25_002512	CVT25_013086	A0A409XUQ1	A0A409XHQ0	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_013941	A0A409XUQ1	A0A409XJW9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
CVT25_002512	CVT25_015323	A0A409XUQ1	A0A409WH55	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_004316	CVT25_002224	A0A409XQ08	A0A409XF61	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
CVT25_004316	CVT25_002512	A0A409XQ08	A0A409XUQ1	Uncharacterized protein.	Uncharacterized protein.	0.999