(30 nodes) RNA Polymerase III Transcription network (Psilocybe cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT25_005724	Uncharacterized protein. (169 aa)
	CVT25_005886	ENDO3c domain-containing protein. (497 aa)
	CVT25_005945	Uncharacterized protein. (857 aa)
	CVT25_012669	Uncharacterized protein. (298 aa)
	CVT25_009160	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1186 aa)
	CVT25_010907	Uncharacterized protein. (71 aa)
	CVT25_011173	Uncharacterized protein. (480 aa)
	CVT25_011881	Uncharacterized protein. (771 aa)
	CVT25_003445	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1400 aa)
	CVT25_000241	Uncharacterized protein. (640 aa)
	CVT25_000267	TFIIIC_sub6 domain-containing protein. (220 aa)
	CVT25_013128	Uncharacterized protein. (1024 aa)
	CVT25_001833	Uncharacterized protein. (215 aa)
	CVT25_015748	Uncharacterized protein. (639 aa)
	CVT25_013438	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (208 aa)
	CVT25_007050	Uncharacterized protein. (208 aa)
	CVT25_006122	RPOLD domain-containing protein. (356 aa)
	CVT25_013214	RPOL4c domain-containing protein. (214 aa)
	CVT25_010530	Uncharacterized protein. (74 aa)
	CVT25_004230	zf-TFIIIC domain-containing protein. (99 aa)
	CVT25_001674	TFIIB-type domain-containing protein. (681 aa)
	CVT25_012605	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (557 aa)
	CVT25_013117	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
	CVT25_009987	Uncharacterized protein. (82 aa)
	CVT25_012326	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (157 aa)
	CVT25_002228	Uncharacterized protein. (294 aa)
	CVT25_002214	Uncharacterized protein. (296 aa)
	CVT25_002227	Uncharacterized protein. (147 aa)
	CVT25_010267	TFIIIC_delta domain-containing protein. (622 aa)
	CVT25_009460	Uncharacterized protein. (403 aa)

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_000241	CVT25_000267	A0A409XW65	A0A409XM38	Uncharacterized protein.	TFIIIC_sub6 domain-containing protein.	0.972
CVT25_000241	CVT25_001674	A0A409XW65	A0A409X5C1	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.899
CVT25_000241	CVT25_001833	A0A409XW65	A0A409WQD7	Uncharacterized protein.	Uncharacterized protein.	0.712
CVT25_000241	CVT25_002214	A0A409XW65	A0A409XF52	Uncharacterized protein.	Uncharacterized protein.	0.699
CVT25_000241	CVT25_002227	A0A409XW65	A0A409XF40	Uncharacterized protein.	Uncharacterized protein.	0.699
CVT25_000241	CVT25_002228	A0A409XW65	A0A409XF67	Uncharacterized protein.	Uncharacterized protein.	0.699
CVT25_000241	CVT25_003445	A0A409XW65	A0A409WLW7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.800
CVT25_000241	CVT25_004230	A0A409XW65	A0A409X313	Uncharacterized protein.	zf-TFIIIC domain-containing protein.	0.698
CVT25_000241	CVT25_005724	A0A409XW65	A0A409VLL7	Uncharacterized protein.	Uncharacterized protein.	0.687
CVT25_000241	CVT25_005945	A0A409XW65	A0A409VMC0	Uncharacterized protein.	Uncharacterized protein.	0.768
CVT25_000241	CVT25_006122	A0A409XW65	A0A409WYW6	Uncharacterized protein.	RPOLD domain-containing protein.	0.704
CVT25_000241	CVT25_009160	A0A409XW65	A0A409VRR1	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.711
CVT25_000241	CVT25_009460	A0A409XW65	A0A409XD68	Uncharacterized protein.	Uncharacterized protein.	0.782
CVT25_000241	CVT25_010267	A0A409XW65	A0A409XDH1	Uncharacterized protein.	TFIIIC_delta domain-containing protein.	0.798
CVT25_000241	CVT25_010907	A0A409XW65	A0A409WFP7	Uncharacterized protein.	Uncharacterized protein.	0.716
CVT25_000241	CVT25_011173	A0A409XW65	A0A409WGS7	Uncharacterized protein.	Uncharacterized protein.	0.774
CVT25_000241	CVT25_011881	A0A409XW65	A0A409WIT3	Uncharacterized protein.	Uncharacterized protein.	0.978
CVT25_000241	CVT25_012605	A0A409XW65	A0A409X7Z4	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
CVT25_000241	CVT25_012669	A0A409XW65	A0A409VMZ1	Uncharacterized protein.	Uncharacterized protein.	0.785
CVT25_000241	CVT25_013117	A0A409XW65	A0A409XHQ1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.753