12 items (Serpula lacrymans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F8PR59_SERL3	Uncharacterized protein. (1103 aa)
	F8PNG9_SERL3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (997 aa)
	F8PHT9_SERL3	Uncharacterized protein. (581 aa)
	F8Q6C1_SERL3	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (456 aa)
	F8QB02_SERL3	Spindle pole body component. (845 aa)
	F8QCI4_SERL3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (849 aa)
	F8QEV1_SERL3	Spindle pole body component. (735 aa)
	F8QFA1_SERL3	Spindle pole body component. (853 aa)
	F8Q5R2_SERL3	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1068 aa)
	F8QGY9_SERL3	Uncharacterized protein. (2150 aa)
	F8Q4N5_SERL3	Uncharacterized protein. (73 aa)
	F8Q3Z8_SERL3	WD_REPEATS_REGION domain-containing protein. (160 aa)

Your Current Organism:

Serpula lacrymans

NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F8PNG9_SERL3	F8Q5R2_SERL3	F8PNG9	F8Q5R2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.975
F8PNG9_SERL3	F8QCI4_SERL3	F8PNG9	F8QCI4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.959
F8PNG9_SERL3	F8QGY9_SERL3	F8PNG9	F8QGY9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.842
F8PR59_SERL3	F8Q4N5_SERL3	F8PR59	F8Q4N5	Uncharacterized protein.	Uncharacterized protein.	0.995
F8PR59_SERL3	F8Q6C1_SERL3	F8PR59	F8Q6C1	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.988
F8PR59_SERL3	F8QB02_SERL3	F8PR59	F8QB02	Uncharacterized protein.	Spindle pole body component.	0.990
F8PR59_SERL3	F8QEV1_SERL3	F8PR59	F8QEV1	Uncharacterized protein.	Spindle pole body component.	0.993
F8PR59_SERL3	F8QFA1_SERL3	F8PR59	F8QFA1	Uncharacterized protein.	Spindle pole body component.	0.991
F8Q3Z8_SERL3	F8QB02_SERL3	F8Q3Z8	F8QB02	WD_REPEATS_REGION domain-containing protein.	Spindle pole body component.	0.486
F8Q4N5_SERL3	F8PR59_SERL3	F8Q4N5	F8PR59	Uncharacterized protein.	Uncharacterized protein.	0.995
F8Q4N5_SERL3	F8Q6C1_SERL3	F8Q4N5	F8Q6C1	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.986
F8Q4N5_SERL3	F8QB02_SERL3	F8Q4N5	F8QB02	Uncharacterized protein.	Spindle pole body component.	0.989
F8Q4N5_SERL3	F8QEV1_SERL3	F8Q4N5	F8QEV1	Uncharacterized protein.	Spindle pole body component.	0.988
F8Q4N5_SERL3	F8QFA1_SERL3	F8Q4N5	F8QFA1	Uncharacterized protein.	Spindle pole body component.	0.997
F8Q5R2_SERL3	F8PNG9_SERL3	F8Q5R2	F8PNG9	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.975
F8Q5R2_SERL3	F8Q6C1_SERL3	F8Q5R2	F8Q6C1	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.540
F8Q5R2_SERL3	F8QB02_SERL3	F8Q5R2	F8QB02	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Spindle pole body component.	0.556
F8Q5R2_SERL3	F8QCI4_SERL3	F8Q5R2	F8QCI4	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.980
F8Q5R2_SERL3	F8QGY9_SERL3	F8Q5R2	F8QGY9	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.624
F8Q6C1_SERL3	F8PR59_SERL3	F8Q6C1	F8PR59	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.988