7 items (Serpula lacrymans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F8PJF6_SERL3	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	F8QBB0_SERL3	PlsC domain-containing protein. (638 aa)
	F8QF57_SERL3	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (183 aa)
	F8QBA9_SERL3	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	F8Q437_SERL3	Uncharacterized protein. (201 aa)
	F8PUL5_SERL3	Uncharacterized protein. (112 aa)
	F8PR01_SERL3	Uncharacterized protein. (150 aa)

Your Current Organism:

Serpula lacrymans

NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F8PJF6_SERL3	F8PR01_SERL3	F8PJF6	F8PR01	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.980
F8PJF6_SERL3	F8PUL5_SERL3	F8PJF6	F8PUL5	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.995
F8PJF6_SERL3	F8QBA9_SERL3	F8PJF6	F8QBA9	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.995
F8PJF6_SERL3	F8QBB0_SERL3	F8PJF6	F8QBB0	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	PlsC domain-containing protein.	0.995
F8PJF6_SERL3	F8QF57_SERL3	F8PJF6	F8QF57	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.981
F8PR01_SERL3	F8PJF6_SERL3	F8PR01	F8PJF6	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.980
F8PR01_SERL3	F8PUL5_SERL3	F8PR01	F8PUL5	Uncharacterized protein.	Uncharacterized protein.	0.999
F8PR01_SERL3	F8Q437_SERL3	F8PR01	F8Q437	Uncharacterized protein.	Uncharacterized protein.	0.596
F8PR01_SERL3	F8QF57_SERL3	F8PR01	F8QF57	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.997
F8PUL5_SERL3	F8PJF6_SERL3	F8PUL5	F8PJF6	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.995
F8PUL5_SERL3	F8PR01_SERL3	F8PUL5	F8PR01	Uncharacterized protein.	Uncharacterized protein.	0.999
F8PUL5_SERL3	F8QBA9_SERL3	F8PUL5	F8QBA9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.988
F8PUL5_SERL3	F8QBB0_SERL3	F8PUL5	F8QBB0	Uncharacterized protein.	PlsC domain-containing protein.	0.988
F8PUL5_SERL3	F8QF57_SERL3	F8PUL5	F8QF57	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.995
F8Q437_SERL3	F8PR01_SERL3	F8Q437	F8PR01	Uncharacterized protein.	Uncharacterized protein.	0.596
F8Q437_SERL3	F8QBA9_SERL3	F8Q437	F8QBA9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.629
F8Q437_SERL3	F8QBB0_SERL3	F8Q437	F8QBB0	Uncharacterized protein.	PlsC domain-containing protein.	0.629
F8QBA9_SERL3	F8PJF6_SERL3	F8QBA9	F8PJF6	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.995
F8QBA9_SERL3	F8PUL5_SERL3	F8QBA9	F8PUL5	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Uncharacterized protein.	0.988
F8QBA9_SERL3	F8Q437_SERL3	F8QBA9	F8Q437	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Uncharacterized protein.	0.629