92 items (Serpula lacrymans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F8PPX2_SERL3	Uncharacterized protein. (202 aa)
	F8PPX4_SERL3	Carboxypeptidase; Belongs to the peptidase S10 family. (608 aa)
	F8PQ73_SERL3	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	F8PQ74_SERL3	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	F8PQA5_SERL3	SLD3 domain-containing protein. (477 aa)
	F8PRE2_SERL3	Uncharacterized protein. (683 aa)
	F8PRP8_SERL3	Uncharacterized protein. (157 aa)
	F8PRP9_SERL3	Uncharacterized protein. (667 aa)
	F8PSC5_SERL3	Aminotran_1_2 domain-containing protein. (455 aa)
	F8PSQ5_SERL3	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (547 aa)
	F8PT72_SERL3	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (375 aa)
	F8PUV7_SERL3	Uncharacterized protein. (146 aa)
	F8PUV8_SERL3	Uncharacterized protein. (159 aa)
	F8PVG0_SERL3	Uncharacterized protein. (138 aa)
	F8PWA2_SERL3	Uncharacterized protein. (1199 aa)
	Ndufs7	Ndufs7, NADH:ubiquinone oxidoreductase 20 kd subunit; Belongs to the complex I 20 kDa subunit family. (227 aa)
	F8PWH8_SERL3	Uncharacterized protein. (1015 aa)
	F8PWP4_SERL3	Uncharacterized protein. (66 aa)
	F8PWR8_SERL3	LsmAD domain-containing protein. (827 aa)
	F8PXY4_SERL3	Uncharacterized protein. (340 aa)
	F8PY66_SERL3	Uncharacterized protein; Belongs to the DEAD box helicase family. (475 aa)
	F8PY97_SERL3	Uncharacterized protein. (498 aa)
	F8PYK4_SERL3	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (139 aa)
	F8Q095_SERL3	Uncharacterized protein. (248 aa)
	F8Q0B4_SERL3	MYND-type domain-containing protein. (367 aa)
	F8Q156_SERL3	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (929 aa)
	F8Q1L3_SERL3	SAM domain-containing protein. (653 aa)
	F8Q1M1_SERL3	Helitron_like_N domain-containing protein. (362 aa)
	F8Q2S0_SERL3	Ribosomal_S10 domain-containing protein. (236 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (98 aa)
	F8Q339_SERL3	Uncharacterized protein. (1155 aa)
	F8Q3X3_SERL3	Dsl1_C domain-containing protein. (907 aa)
	F8Q431_SERL3	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family. (407 aa)
	F8Q465_SERL3	Uncharacterized protein. (364 aa)
	F8Q4F3_SERL3	CAP-Gly domain-containing protein. (235 aa)
	F8Q4R0_SERL3	PAT1 domain-containing protein. (939 aa)
	F8Q517_SERL3	Uncharacterized protein. (82 aa)
	F8Q5R2_SERL3	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1068 aa)
	F8Q5V8_SERL3	DUF5595 domain-containing protein. (648 aa)
	F8QIE5_SERL3	Uncharacterized protein. (243 aa)
	F8QI77_SERL3	Uncharacterized protein. (161 aa)
	F8QI56_SERL3	DHR10 domain-containing protein. (445 aa)
	F8QI49_SERL3	Uncharacterized protein. (117 aa)
	F8QHA7_SERL3	Uncharacterized protein. (490 aa)
	F8QGY7_SERL3	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (353 aa)
	F8QGN7_SERL3	Uncharacterized protein. (142 aa)
	F8QGN6_SERL3	Uncharacterized protein. (177 aa)
	F8QFB1_SERL3	Tr-type G domain-containing protein. (581 aa)
	F8QEJ1_SERL3	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (684 aa)
	F8QD76_SERL3	Spc7 domain-containing protein. (472 aa)
	F8QD69_SERL3	TPX2 domain-containing protein. (416 aa)
	F8QCD3_SERL3	GFA domain-containing protein. (162 aa)
	F8QBT3_SERL3	Uncharacterized protein. (242 aa)
	F8QBR2_SERL3	Uncharacterized protein. (507 aa)
	F8QAV4_SERL3	HORMA domain-containing protein. (210 aa)
	F8QA09_SERL3	Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (182 aa)
	F8Q9T5_SERL3	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (520 aa)
	F8Q9L8_SERL3	Uncharacterized protein. (203 aa)
	F8Q926_SERL3	MKT1_C domain-containing protein. (348 aa)
	F8Q828_SERL3	CENP-C_C domain-containing protein. (578 aa)
	F8Q7U0_SERL3	Uncharacterized protein. (107 aa)
	F8Q7L6_SERL3	Uncharacterized protein. (491 aa)
	F8Q7F1_SERL3	Uncharacterized protein. (200 aa)
	F8Q6G6_SERL3	Uncharacterized protein. (353 aa)
	F8Q6F0_SERL3	Uncharacterized protein. (301 aa)
	F8Q651_SERL3	Uncharacterized protein. (1259 aa)
	F8Q649_SERL3	Piwi domain-containing protein. (305 aa)
	F8Q604_SERL3	Uncharacterized protein. (1499 aa)
	F8Q616_SERL3	Uncharacterized protein. (341 aa)
	F8PEW6_SERL3	Uncharacterized protein. (373 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (136 aa)
	F8PF42_SERL3	Uncharacterized protein. (523 aa)
	F8PG30_SERL3	Uncharacterized protein. (695 aa)
	F8PGJ4_SERL3	PUM-HD domain-containing protein. (387 aa)
	F8PIG0_SERL3	Uncharacterized protein. (523 aa)
	F8PIM6_SERL3	Uncharacterized protein. (784 aa)
	F8PIN5_SERL3	Uncharacterized protein. (352 aa)
	F8PJ52_SERL3	AAA_12 domain-containing protein. (592 aa)
	F8PJE0_SERL3	Uncharacterized protein; Belongs to the DEAD box helicase family. (438 aa)
	F8PJL2_SERL3	Uncharacterized protein. (455 aa)
	F8PK77_SERL3	HTH La-type RNA-binding domain-containing protein. (435 aa)
	F8PK99_SERL3	RRF domain-containing protein. (254 aa)
	F8PL99_SERL3	Uncharacterized protein. (184 aa)
	F8PMR9_SERL3	Uncharacterized protein. (295 aa)
	F8PNG9_SERL3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (997 aa)
	F8PNM1_SERL3	SurE domain-containing protein. (98 aa)
	F8PNQ7_SERL3	G-patch domain-containing protein. (369 aa)
	F8PNU1_SERL3	ATE_N domain-containing protein. (102 aa)
	F8PNU2_SERL3	ATE_C domain-containing protein. (341 aa)
	F8PP31_SERL3	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1158 aa)
	F8PPW8_SERL3	Uncharacterized protein. (509 aa)
	F8PPW9_SERL3	Uncharacterized protein. (822 aa)

Your Current Organism:

Serpula lacrymans

NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F8PEW6_SERL3	F8PJE0_SERL3	F8PEW6	F8PJE0	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.620
F8PEW6_SERL3	F8PP31_SERL3	F8PEW6	F8PP31	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.569
F8PEW6_SERL3	F8QEJ1_SERL3	F8PEW6	F8QEJ1	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.582
F8PF42_SERL3	F8PJE0_SERL3	F8PF42	F8PJE0	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.648
F8PF42_SERL3	F8PWR8_SERL3	F8PF42	F8PWR8	Uncharacterized protein.	LsmAD domain-containing protein.	0.697
F8PF42_SERL3	F8Q2S0_SERL3	F8PF42	F8Q2S0	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.569
F8PF42_SERL3	F8Q4R0_SERL3	F8PF42	F8Q4R0	Uncharacterized protein.	PAT1 domain-containing protein.	0.451
F8PF42_SERL3	F8QEJ1_SERL3	F8PF42	F8QEJ1	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.807
F8PF42_SERL3	F8QFB1_SERL3	F8PF42	F8QFB1	Uncharacterized protein.	Tr-type G domain-containing protein.	0.600
F8PF42_SERL3	F8QHA7_SERL3	F8PF42	F8QHA7	Uncharacterized protein.	Uncharacterized protein.	0.497
F8PG30_SERL3	F8PL99_SERL3	F8PG30	F8PL99	Uncharacterized protein.	Uncharacterized protein.	0.926
F8PG30_SERL3	F8PPX2_SERL3	F8PG30	F8PPX2	Uncharacterized protein.	Uncharacterized protein.	0.922
F8PG30_SERL3	F8PUV7_SERL3	F8PG30	F8PUV7	Uncharacterized protein.	Uncharacterized protein.	0.753
F8PG30_SERL3	F8PUV8_SERL3	F8PG30	F8PUV8	Uncharacterized protein.	Uncharacterized protein.	0.753
F8PG30_SERL3	F8PWP4_SERL3	F8PG30	F8PWP4	Uncharacterized protein.	Uncharacterized protein.	0.759
F8PG30_SERL3	F8Q5V8_SERL3	F8PG30	F8Q5V8	Uncharacterized protein.	DUF5595 domain-containing protein.	0.595
F8PG30_SERL3	F8Q7F1_SERL3	F8PG30	F8Q7F1	Uncharacterized protein.	Uncharacterized protein.	0.432
F8PG30_SERL3	F8Q7U0_SERL3	F8PG30	F8Q7U0	Uncharacterized protein.	Uncharacterized protein.	0.958
F8PGJ4_SERL3	F8PJE0_SERL3	F8PGJ4	F8PJE0	PUM-HD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.447
F8PGJ4_SERL3	F8PK99_SERL3	F8PGJ4	F8PK99	PUM-HD domain-containing protein.	RRF domain-containing protein.	0.560