5 items (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SF1	Splicing factor 1 isoform X1. (393 aa)
	RBM39	RNA-binding protein 39 isoform X3. (530 aa)
	LUC7L3	Luc7-like protein 3 isoform X2. (432 aa)
	RBM25	RNA-binding protein 25. (841 aa)
	ENSEEUP00000009063	annotation not available (857 aa)

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEUP00000009063	LUC7L3	ENSEEUP00000009063	ENSEEUP00000004331	annotation not available	Luc7-like protein 3 isoform X2.	0.924
ENSEEUP00000009063	RBM25	ENSEEUP00000009063	ENSEEUP00000006740	annotation not available	RNA-binding protein 25.	0.985
ENSEEUP00000009063	RBM39	ENSEEUP00000009063	ENSEEUP00000004003	annotation not available	RNA-binding protein 39 isoform X3.	0.960
ENSEEUP00000009063	SF1	ENSEEUP00000009063	ENSEEUP00000000946	annotation not available	Splicing factor 1 isoform X1.	0.961
LUC7L3	ENSEEUP00000009063	ENSEEUP00000004331	ENSEEUP00000009063	Luc7-like protein 3 isoform X2.	annotation not available	0.924
LUC7L3	RBM25	ENSEEUP00000004331	ENSEEUP00000006740	Luc7-like protein 3 isoform X2.	RNA-binding protein 25.	0.998
LUC7L3	RBM39	ENSEEUP00000004331	ENSEEUP00000004003	Luc7-like protein 3 isoform X2.	RNA-binding protein 39 isoform X3.	0.954
LUC7L3	SF1	ENSEEUP00000004331	ENSEEUP00000000946	Luc7-like protein 3 isoform X2.	Splicing factor 1 isoform X1.	0.949
RBM25	ENSEEUP00000009063	ENSEEUP00000006740	ENSEEUP00000009063	RNA-binding protein 25.	annotation not available	0.985
RBM25	LUC7L3	ENSEEUP00000006740	ENSEEUP00000004331	RNA-binding protein 25.	Luc7-like protein 3 isoform X2.	0.998
RBM25	RBM39	ENSEEUP00000006740	ENSEEUP00000004003	RNA-binding protein 25.	RNA-binding protein 39 isoform X3.	0.982
RBM25	SF1	ENSEEUP00000006740	ENSEEUP00000000946	RNA-binding protein 25.	Splicing factor 1 isoform X1.	0.966
RBM39	ENSEEUP00000009063	ENSEEUP00000004003	ENSEEUP00000009063	RNA-binding protein 39 isoform X3.	annotation not available	0.960
RBM39	LUC7L3	ENSEEUP00000004003	ENSEEUP00000004331	RNA-binding protein 39 isoform X3.	Luc7-like protein 3 isoform X2.	0.954
RBM39	RBM25	ENSEEUP00000004003	ENSEEUP00000006740	RNA-binding protein 39 isoform X3.	RNA-binding protein 25.	0.982
RBM39	SF1	ENSEEUP00000004003	ENSEEUP00000000946	RNA-binding protein 39 isoform X3.	Splicing factor 1 isoform X1.	0.944
SF1	ENSEEUP00000009063	ENSEEUP00000000946	ENSEEUP00000009063	Splicing factor 1 isoform X1.	annotation not available	0.961
SF1	LUC7L3	ENSEEUP00000000946	ENSEEUP00000004331	Splicing factor 1 isoform X1.	Luc7-like protein 3 isoform X2.	0.949
SF1	RBM25	ENSEEUP00000000946	ENSEEUP00000006740	Splicing factor 1 isoform X1.	RNA-binding protein 25.	0.966
SF1	RBM39	ENSEEUP00000000946	ENSEEUP00000004003	Splicing factor 1 isoform X1.	RNA-binding protein 39 isoform X3.	0.944