6 items (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103115403	UPF0562 protein C7orf55 homolog. (141 aa)
	PRR3	Proline-rich protein 3 isoform X2. (244 aa)
	PRPF40B	pre-mRNA-processing factor 40 homolog B isoform X3. (772 aa)
	ENSEEUP00000007508	annotation not available (268 aa)
	PRPF39	pre-mRNA-processing factor 39 isoform X2. (527 aa)
	LOC103115402	Putative RNA-binding protein Luc7-like 2 isoform X4. (367 aa)

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEUP00000007508	LOC103115402	ENSEEUP00000007508	ENSEEUP00000011202	annotation not available	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.848
ENSEEUP00000007508	LOC103115403	ENSEEUP00000007508	ENSEEUP00000005642	annotation not available	UPF0562 protein C7orf55 homolog.	0.848
ENSEEUP00000007508	PRPF39	ENSEEUP00000007508	ENSEEUP00000007581	annotation not available	pre-mRNA-processing factor 39 isoform X2.	0.959
ENSEEUP00000007508	PRPF40B	ENSEEUP00000007508	ENSEEUP00000006676	annotation not available	pre-mRNA-processing factor 40 homolog B isoform X3.	0.854
ENSEEUP00000007508	PRR3	ENSEEUP00000007508	ENSEEUP00000005685	annotation not available	Proline-rich protein 3 isoform X2.	0.407
LOC103115402	ENSEEUP00000007508	ENSEEUP00000011202	ENSEEUP00000007508	Putative RNA-binding protein Luc7-like 2 isoform X4.	annotation not available	0.848
LOC103115402	PRPF39	ENSEEUP00000011202	ENSEEUP00000007581	Putative RNA-binding protein Luc7-like 2 isoform X4.	pre-mRNA-processing factor 39 isoform X2.	0.858
LOC103115402	PRPF40B	ENSEEUP00000011202	ENSEEUP00000006676	Putative RNA-binding protein Luc7-like 2 isoform X4.	pre-mRNA-processing factor 40 homolog B isoform X3.	0.867
LOC103115402	PRR3	ENSEEUP00000011202	ENSEEUP00000005685	Putative RNA-binding protein Luc7-like 2 isoform X4.	Proline-rich protein 3 isoform X2.	0.693
LOC103115403	ENSEEUP00000007508	ENSEEUP00000005642	ENSEEUP00000007508	UPF0562 protein C7orf55 homolog.	annotation not available	0.848
LOC103115403	PRPF39	ENSEEUP00000005642	ENSEEUP00000007581	UPF0562 protein C7orf55 homolog.	pre-mRNA-processing factor 39 isoform X2.	0.858
LOC103115403	PRPF40B	ENSEEUP00000005642	ENSEEUP00000006676	UPF0562 protein C7orf55 homolog.	pre-mRNA-processing factor 40 homolog B isoform X3.	0.866
LOC103115403	PRR3	ENSEEUP00000005642	ENSEEUP00000005685	UPF0562 protein C7orf55 homolog.	Proline-rich protein 3 isoform X2.	0.693
PRPF39	ENSEEUP00000007508	ENSEEUP00000007581	ENSEEUP00000007508	pre-mRNA-processing factor 39 isoform X2.	annotation not available	0.959
PRPF39	LOC103115402	ENSEEUP00000007581	ENSEEUP00000011202	pre-mRNA-processing factor 39 isoform X2.	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.858
PRPF39	LOC103115403	ENSEEUP00000007581	ENSEEUP00000005642	pre-mRNA-processing factor 39 isoform X2.	UPF0562 protein C7orf55 homolog.	0.858
PRPF39	PRPF40B	ENSEEUP00000007581	ENSEEUP00000006676	pre-mRNA-processing factor 39 isoform X2.	pre-mRNA-processing factor 40 homolog B isoform X3.	0.878
PRPF39	PRR3	ENSEEUP00000007581	ENSEEUP00000005685	pre-mRNA-processing factor 39 isoform X2.	Proline-rich protein 3 isoform X2.	0.518
PRPF40B	ENSEEUP00000007508	ENSEEUP00000006676	ENSEEUP00000007508	pre-mRNA-processing factor 40 homolog B isoform X3.	annotation not available	0.854
PRPF40B	LOC103115402	ENSEEUP00000006676	ENSEEUP00000011202	pre-mRNA-processing factor 40 homolog B isoform X3.	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.867