STRINGSTRING
PSIP1 PSIP1 RBM22 RBM22 WBP4 WBP4 NCBP2L NCBP2L SF3A1 SF3A1 CWC15 CWC15 SFSWAP SFSWAP SNRPC SNRPC RBM17 RBM17 WBP11 WBP11 DNAJC8 DNAJC8 CLNS1A CLNS1A ENSEEUP00000009063 ENSEEUP00000009063 ENSEEUP00000008944 ENSEEUP00000008944 SRSF1 SRSF1 PRPF39 PRPF39 DCPS DCPS PRPF40B PRPF40B PRPF4B PRPF4B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PSIP1PC4 and SFRS1-interacting protein isoform X1. (506 aa)
RBM22pre-mRNA-splicing factor RBM22. (419 aa)
WBP4WW domain-binding protein 4. (347 aa)
NCBP2LNuclear cap binding protein subunit 2 like. (152 aa)
SF3A1Splicing factor 3A subunit 1. (701 aa)
CWC15Spliceosome-associated protein CWC15 homolog. (231 aa)
SFSWAPSplicing factor, suppressor of white-apricot homolog. (800 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (175 aa)
RBM17Splicing factor 45. (333 aa)
WBP11WW domain-binding protein 11. (639 aa)
DNAJC8dnaJ homolog subfamily C member 8. (263 aa)
CLNS1AMethylosome subunit pICln. (214 aa)
ENSEEUP00000009063annotation not available (857 aa)
ENSEEUP00000008944annotation not available (395 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X2. (292 aa)
PRPF39pre-mRNA-processing factor 39 isoform X2. (527 aa)
DCPSm7GpppX diphosphatase. (337 aa)
PRPF40Bpre-mRNA-processing factor 40 homolog B isoform X3. (772 aa)
PRPF4BSerine/threonine-protein kinase PRP4 homolog. (1004 aa)
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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