26 items (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSEEUP00000001055	annotation not available (315 aa)
	PRPF6	pre-mRNA processing factor 6. (938 aa)
	TXNL4B	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (146 aa)
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (78 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (60 aa)
	ENSEEUP00000004418	annotation not available (383 aa)
	LOC103126981	UPF0692 protein C19orf54 homolog. (179 aa)
	ENSEEUP00000005228	annotation not available (95 aa)
	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31 isoform X3. (384 aa)
	SNRPE	Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (90 aa)
	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3. (681 aa)
	LOC103123420	Small nuclear ribonucleoprotein-associated protein. (239 aa)
	PRPF4	pre-mRNA processing factor 4. (458 aa)
	ZMAT2	Zinc finger matrin-type protein 2. (152 aa)
	ENSEEUP00000007143	annotation not available (188 aa)
	USP39	U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (563 aa)
	SNRNP27	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (155 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (91 aa)
	DDX23	Probable ATP-dependent RNA helicase DDX23. (822 aa)
	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component. (881 aa)
	ENSEEUP00000011134	annotation not available (2333 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2018 aa)
	ENSEEUP00000013081	annotation not available (358 aa)
	ENSEEUP00000013630	annotation not available (102 aa)
	SNRPA	U1 small nuclear ribonucleoprotein A isoform X1. (282 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). (284 aa)

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX23	EFTUD2	ENSEEUP00000008818	ENSEEUP00000010179	Probable ATP-dependent RNA helicase DDX23.	116 kDa U5 small nuclear ribonucleoprotein component.	0.996
DDX23	ENSEEUP00000001055	ENSEEUP00000008818	ENSEEUP00000001055	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.595
DDX23	ENSEEUP00000004418	ENSEEUP00000008818	ENSEEUP00000004418	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.815
DDX23	ENSEEUP00000005228	ENSEEUP00000008818	ENSEEUP00000005228	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.883
DDX23	ENSEEUP00000007143	ENSEEUP00000008818	ENSEEUP00000007143	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.937
DDX23	ENSEEUP00000011134	ENSEEUP00000008818	ENSEEUP00000011134	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.998
DDX23	ENSEEUP00000013081	ENSEEUP00000008818	ENSEEUP00000013081	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.996
DDX23	ENSEEUP00000013630	ENSEEUP00000008818	ENSEEUP00000013630	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.745
DDX23	LOC103123420	ENSEEUP00000008818	ENSEEUP00000006755	Probable ATP-dependent RNA helicase DDX23.	Small nuclear ribonucleoprotein-associated protein.	0.937
DDX23	LOC103126981	ENSEEUP00000008818	ENSEEUP00000004779	Probable ATP-dependent RNA helicase DDX23.	UPF0692 protein C19orf54 homolog.	0.726
DDX23	LSM5	ENSEEUP00000008818	ENSEEUP00000003706	Probable ATP-dependent RNA helicase DDX23.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.868
DDX23	LSM6	ENSEEUP00000008818	ENSEEUP00000001907	Probable ATP-dependent RNA helicase DDX23.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.887
DDX23	PRPF3	ENSEEUP00000008818	ENSEEUP00000006712	Probable ATP-dependent RNA helicase DDX23.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.976
DDX23	PRPF31	ENSEEUP00000008818	ENSEEUP00000005598	Probable ATP-dependent RNA helicase DDX23.	U4/U6 small nuclear ribonucleoprotein Prp31 isoform X3.	0.950
DDX23	PRPF4	ENSEEUP00000008818	ENSEEUP00000006833	Probable ATP-dependent RNA helicase DDX23.	pre-mRNA processing factor 4.	0.971
DDX23	PRPF6	ENSEEUP00000008818	ENSEEUP00000000155	Probable ATP-dependent RNA helicase DDX23.	pre-mRNA processing factor 6.	0.997
DDX23	SNRNP200	ENSEEUP00000008818	ENSEEUP00000011188	Probable ATP-dependent RNA helicase DDX23.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.994
DDX23	SNRNP27	ENSEEUP00000008818	ENSEEUP00000007639	Probable ATP-dependent RNA helicase DDX23.	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein.	0.742
DDX23	SNRPA	ENSEEUP00000008818	ENSEEUP00000013817	Probable ATP-dependent RNA helicase DDX23.	U1 small nuclear ribonucleoprotein A isoform X1.	0.740
DDX23	SNRPB	ENSEEUP00000008818	ENSEEUP00000014212	Probable ATP-dependent RNA helicase DDX23.	Small nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity).	0.421