STRINGSTRING
PRPF6 PRPF6 TXNL4B TXNL4B ENSEEUP00000001055 ENSEEUP00000001055 ENSEEUP00000001752 ENSEEUP00000001752 LSM6 LSM6 LSM5 LSM5 ENSEEUP00000004418 ENSEEUP00000004418 SNRPD1 SNRPD1 LOC103126981 LOC103126981 ENSEEUP00000005228 ENSEEUP00000005228 PRPF31 PRPF31 SNRPE SNRPE SNRPG SNRPG PRPF3 PRPF3 LOC103123420 LOC103123420 PRPF4 PRPF4 ZMAT2 ZMAT2 ENSEEUP00000007143 ENSEEUP00000007143 USP39 USP39 SNRNP27 SNRNP27 TXNL4A TXNL4A DDX23 DDX23 EFTUD2 EFTUD2 ENSEEUP00000011134 ENSEEUP00000011134 SNRNP200 SNRNP200 ENSEEUP00000013081 ENSEEUP00000013081 ENSEEUP00000013630 ENSEEUP00000013630 SNRPA SNRPA SNRPD3 SNRPD3 SNRPB SNRPB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF6pre-mRNA processing factor 6. (938 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (146 aa)
ENSEEUP00000001055annotation not available (315 aa)
ENSEEUP00000001752annotation not available (65 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (78 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (60 aa)
ENSEEUP00000004418annotation not available (383 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (89 aa)
LOC103126981UPF0692 protein C19orf54 homolog. (179 aa)
ENSEEUP00000005228annotation not available (95 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31 isoform X3. (384 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (90 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3. (681 aa)
LOC103123420Small nuclear ribonucleoprotein-associated protein. (239 aa)
PRPF4pre-mRNA processing factor 4. (458 aa)
ZMAT2Zinc finger matrin-type protein 2. (152 aa)
ENSEEUP00000007143annotation not available (188 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (563 aa)
SNRNP27U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (155 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (91 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (822 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (881 aa)
ENSEEUP00000011134annotation not available (2333 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2018 aa)
ENSEEUP00000013081annotation not available (358 aa)
ENSEEUP00000013630annotation not available (102 aa)
SNRPAU1 small nuclear ribonucleoprotein A isoform X1. (282 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (125 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). (284 aa)
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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