7 items (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103115403	UPF0562 protein C7orf55 homolog. (141 aa)
	ENSEEUP00000009063	annotation not available (857 aa)
	LOC103115402	Putative RNA-binding protein Luc7-like 2 isoform X4. (367 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (175 aa)
	UHRF1BP1	UHRF1-binding protein 1. (1438 aa)
	SF3A1	Splicing factor 3A subunit 1. (701 aa)
	LUC7L3	Luc7-like protein 3 isoform X2. (432 aa)

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEEUP00000009063	LOC103115402	ENSEEUP00000009063	ENSEEUP00000011202	annotation not available	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.604
ENSEEUP00000009063	LOC103115403	ENSEEUP00000009063	ENSEEUP00000005642	annotation not available	UPF0562 protein C7orf55 homolog.	0.567
ENSEEUP00000009063	LUC7L3	ENSEEUP00000009063	ENSEEUP00000004331	annotation not available	Luc7-like protein 3 isoform X2.	0.924
ENSEEUP00000009063	SF3A1	ENSEEUP00000009063	ENSEEUP00000002894	annotation not available	Splicing factor 3A subunit 1.	0.867
LOC103115402	ENSEEUP00000009063	ENSEEUP00000011202	ENSEEUP00000009063	Putative RNA-binding protein Luc7-like 2 isoform X4.	annotation not available	0.604
LOC103115402	LUC7L3	ENSEEUP00000011202	ENSEEUP00000004331	Putative RNA-binding protein Luc7-like 2 isoform X4.	Luc7-like protein 3 isoform X2.	0.584
LOC103115402	SF3A1	ENSEEUP00000011202	ENSEEUP00000002894	Putative RNA-binding protein Luc7-like 2 isoform X4.	Splicing factor 3A subunit 1.	0.634
LOC103115402	SNRPC	ENSEEUP00000011202	ENSEEUP00000013348	Putative RNA-binding protein Luc7-like 2 isoform X4.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.940
LOC103115403	ENSEEUP00000009063	ENSEEUP00000005642	ENSEEUP00000009063	UPF0562 protein C7orf55 homolog.	annotation not available	0.567
LOC103115403	SF3A1	ENSEEUP00000005642	ENSEEUP00000002894	UPF0562 protein C7orf55 homolog.	Splicing factor 3A subunit 1.	0.628
LOC103115403	SNRPC	ENSEEUP00000005642	ENSEEUP00000013348	UPF0562 protein C7orf55 homolog.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.910
LUC7L3	ENSEEUP00000009063	ENSEEUP00000004331	ENSEEUP00000009063	Luc7-like protein 3 isoform X2.	annotation not available	0.924
LUC7L3	LOC103115402	ENSEEUP00000004331	ENSEEUP00000011202	Luc7-like protein 3 isoform X2.	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.584
LUC7L3	SF3A1	ENSEEUP00000004331	ENSEEUP00000002894	Luc7-like protein 3 isoform X2.	Splicing factor 3A subunit 1.	0.661
LUC7L3	SNRPC	ENSEEUP00000004331	ENSEEUP00000013348	Luc7-like protein 3 isoform X2.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.806
SF3A1	ENSEEUP00000009063	ENSEEUP00000002894	ENSEEUP00000009063	Splicing factor 3A subunit 1.	annotation not available	0.867
SF3A1	LOC103115402	ENSEEUP00000002894	ENSEEUP00000011202	Splicing factor 3A subunit 1.	Putative RNA-binding protein Luc7-like 2 isoform X4.	0.634
SF3A1	LOC103115403	ENSEEUP00000002894	ENSEEUP00000005642	Splicing factor 3A subunit 1.	UPF0562 protein C7orf55 homolog.	0.628
SF3A1	LUC7L3	ENSEEUP00000002894	ENSEEUP00000004331	Splicing factor 3A subunit 1.	Luc7-like protein 3 isoform X2.	0.661
SF3A1	SNRPC	ENSEEUP00000002894	ENSEEUP00000013348	Splicing factor 3A subunit 1.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.836