STRINGSTRING
PRPF6 PRPF6 ZCRB1 ZCRB1 SF3B1 SF3B1 ZMAT5 ZMAT5 POLR2A POLR2A ENSEEUP00000001752 ENSEEUP00000001752 POLR2I POLR2I ZRSR2 ZRSR2 ENSEEUP00000003106 ENSEEUP00000003106 POLR2C POLR2C ENSEEUP00000003510 ENSEEUP00000003510 NCBP2L NCBP2L SNRPD1 SNRPD1 ENSEEUP00000004679 ENSEEUP00000004679 YBX1 YBX1 POLR2H POLR2H SNRPE SNRPE SNRPG SNRPG POLR2G POLR2G LOC103116761 LOC103116761 TXNL4A TXNL4A DDX42 DDX42 SRSF1 SRSF1 DDX23 DDX23 POLR2B POLR2B POLR2D POLR2D YBX3 YBX3 POLR2F POLR2F GTF2F2 GTF2F2 EFTUD2 EFTUD2 SNRNP35 SNRNP35 ENSEEUP00000011134 ENSEEUP00000011134 SNRNP200 SNRNP200 ENSEEUP00000013058 ENSEEUP00000013058 RNPC3 RNPC3 ENSEEUP00000012293 ENSEEUP00000012293 SNRPF SNRPF NCBP1 NCBP1 ENSEEUP00000014419 ENSEEUP00000014419 POLR2K POLR2K SF3B3 SF3B3 SNRPB SNRPB SNRPD3 SNRPD3 SNRNP48 SNRNP48 ENSEEUP00000013263 ENSEEUP00000013263 ENSEEUP00000012819 ENSEEUP00000012819 SRSF7 SRSF7 ENSEEUP00000013081 ENSEEUP00000013081
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF6pre-mRNA processing factor 6. (938 aa)
ZCRB1Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (215 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1299 aa)
ZMAT5Zinc finger matrin-type protein 5 isoform X2. (165 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1637 aa)
ENSEEUP00000001752annotation not available (65 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
ZRSR2U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (473 aa)
ENSEEUP00000003106annotation not available (394 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3. (275 aa)
ENSEEUP00000003510annotation not available (586 aa)
NCBP2LNuclear cap binding protein subunit 2 like. (152 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (89 aa)
ENSEEUP00000004679annotation not available (424 aa)
YBX1Nuclease-sensitive element-binding protein 1. (246 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (83 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (90 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
LOC103116761LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1-like. (349 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (91 aa)
DDX42ATP-dependent RNA helicase DDX42 isoform X2. (734 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X2. (292 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (822 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1173 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (84 aa)
YBX3Y-box-binding protein 3. (284 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (125 aa)
GTF2F2General transcription factor IIF subunit 2. (249 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (881 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (247 aa)
ENSEEUP00000011134annotation not available (2333 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2018 aa)
ENSEEUP00000013058annotation not available (891 aa)
RNPC3RNA-binding protein 40 isoform X1. (64 aa)
ENSEEUP00000012293annotation not available (133 aa)
SNRPFSmall nuclear ribonucleoprotein F. (85 aa)
NCBP1Nuclear cap-binding protein subunit 1. (747 aa)
ENSEEUP00000014419annotation not available (65 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (51 aa)
SF3B3Splicing factor 3B subunit 3. (1216 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). (284 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (125 aa)
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (339 aa)
ENSEEUP00000013263annotation not available (519 aa)
ENSEEUP00000012819annotation not available (126 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
ENSEEUP00000013081annotation not available (358 aa)
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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