STRINGSTRING
ENSEEUP00000000236 ENSEEUP00000000236 CPSF1 CPSF1 SRSF3 SRSF3 POLDIP3 POLDIP3 FYTTD1 FYTTD1 C12orf50 C12orf50 ENSEEUP00000001587 ENSEEUP00000001587 ENSEEUP00000001752 ENSEEUP00000001752 ZNF318 ZNF318 DHX38 DHX38 CPSF4 CPSF4 ENSEEUP00000002008 ENSEEUP00000002008 CDC40 CDC40 SRSF6 SRSF6 SRSF11 SRSF11 ENSEEUP00000002309 ENSEEUP00000002309 ENSEEUP00000002418 ENSEEUP00000002418 NUDT21 NUDT21 SREK1 SREK1 ENSEEUP00000003881 ENSEEUP00000003881 WDR33 WDR33 NCBP2L NCBP2L FIP1L1 FIP1L1 RNPS1 RNPS1 TPRG1 TPRG1 CPSF7 CPSF7 EIF4A3 EIF4A3 SNRPE SNRPE SLU7 SLU7 PCF11 PCF11 SNRPG SNRPG ZNF473 ZNF473 ENSEEUP00000006787 ENSEEUP00000006787 ENSEEUP00000006849 ENSEEUP00000006849 ENSEEUP00000007202 ENSEEUP00000007202 CHTOP CHTOP SRSF4 SRSF4 RBM8A RBM8A SRSF1 SRSF1 CSTF1 CSTF1 ALYREF ALYREF ENSEEUP00000009770 ENSEEUP00000009770 LSM11 LSM11 SRSF9 SRSF9 LSM10 LSM10 ENSEEUP00000010964 ENSEEUP00000010964 ENSEEUP00000011153 ENSEEUP00000011153 CLP1 CLP1 LOC103125758 LOC103125758 TPRG1L TPRG1L SNRPF SNRPF PAPOLA PAPOLA ZC3H11A ZC3H11A UPF3B UPF3B SRRM1 SRRM1 CASC3 CASC3 SRSF7 SRSF7 ENSEEUP00000013301 ENSEEUP00000013301 ZC3H13 ZC3H13 DDX39A DDX39A CPSF6 CPSF6 THOC7 THOC7 SARNP SARNP CSTF3 CSTF3 NCBP1 NCBP1 CPSF3 CPSF3 SNRPD3 SNRPD3 SNRPB SNRPB THOC2 THOC2 MAGOH MAGOH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSEEUP00000000236annotation not available (1083 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (1445 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X2. (362 aa)
FYTTD1UAP56-interacting factor isoform X1. (239 aa)
C12orf50LOW QUALITY PROTEIN: uncharacterized protein C12orf50 homolog. (407 aa)
ENSEEUP00000001587annotation not available (648 aa)
ENSEEUP00000001752annotation not available (65 aa)
ZNF318Zinc finger protein 318. (2225 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1119 aa)
CPSF4Cleavage and polyadenylation specificity factor subunit 4 isoform X2. (234 aa)
ENSEEUP00000002008annotation not available (88 aa)
CDC40pre-mRNA-processing factor 17. (568 aa)
SRSF6Serine and arginine rich splicing factor 6. (218 aa)
SRSF11Serine/arginine-rich splicing factor 11 isoform X1. (482 aa)
ENSEEUP00000002309annotation not available (203 aa)
ENSEEUP00000002418annotation not available (239 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1 isoform X2. (609 aa)
ENSEEUP00000003881annotation not available (189 aa)
WDR33WD repeat domain 33. (1207 aa)
NCBP2LNuclear cap binding protein subunit 2 like. (152 aa)
FIP1L1pre-mRNA 3'-end-processing factor FIP1 isoform X1. (561 aa)
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (305 aa)
TPRG1Tumor protein p63-regulated gene 1 protein. (279 aa)
CPSF7Cleavage and polyadenylation specificity factor subunit 7 isoform X1. (399 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (90 aa)
SLU7pre-mRNA-splicing factor SLU7. (586 aa)
PCF11pre-mRNA cleavage complex 2 protein Pcf11 isoform X2. (1652 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
ZNF473Zinc finger protein 473. (865 aa)
ENSEEUP00000006787annotation not available (781 aa)
ENSEEUP00000006849annotation not available (116 aa)
ENSEEUP00000007202annotation not available (431 aa)
CHTOPChromatin target of PRMT1 protein isoform X2. (226 aa)
SRSF4Serine/arginine-rich splicing factor 4 isoform X2. (486 aa)
RBM8ARNA binding motif protein 8A. (174 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X2. (292 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
ALYREFTHO complex subunit 4. (171 aa)
ENSEEUP00000009770annotation not available (264 aa)
LSM11U7 snRNA-associated Sm-like protein LSm11. (210 aa)
SRSF9Serine and arginine rich splicing factor 9. (217 aa)
LSM10U7 snRNA-associated Sm-like protein LSm10 isoform X1. (123 aa)
ENSEEUP00000010964annotation not available (313 aa)
ENSEEUP00000011153annotation not available (638 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
LOC103125758Polyadenylate-binding protein 2 isoform X1. (293 aa)
TPRG1LTumor protein p63-regulated gene 1-like protein. (274 aa)
SNRPFSmall nuclear ribonucleoprotein F. (85 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (705 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A. (817 aa)
UPF3BRegulator of nonsense transcripts 3B isoform X1. (327 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (912 aa)
CASC3Protein CASC3. (511 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
ENSEEUP00000013301annotation not available (431 aa)
ZC3H13Zinc finger CCCH domain-containing protein 13 isoform X1. (1596 aa)
DDX39AATP-dependent RNA helicase DDX39A. (422 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6 isoform X1. (568 aa)
THOC7THO complex subunit 7 homolog. (190 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
CSTF3Cleavage stimulation factor subunit 3. (717 aa)
NCBP1Nuclear cap-binding protein subunit 1. (747 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3. (683 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (125 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). (284 aa)
THOC2THO complex 2. (1505 aa)
MAGOHProtein mago nashi homolog. (86 aa)
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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