39 items (Pteropus alecto) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L5KW64_PTEAL	Plastin-1. (99 aa)
	WDPCP	Uncharacterized protein. (670 aa)
	L5KPT4_PTEAL	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family. (523 aa)
	ATOH1	Protein atonal like protein 1. (352 aa)
	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression. (358 aa)
	SCRIB	Protein scribble like protein. (1502 aa)
	GSDME	Non-syndromic hearing impairment protein 5. (512 aa)
	L5KJ76_PTEAL	Protein scribble like protein. (96 aa)
	DLL1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (842 aa)
	L5KEL2_PTEAL	Usherin. (2952 aa)
	L5KDS3_PTEAL	Usherin. (1265 aa)
	FGF20	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (211 aa)
	L5KC62_PTEAL	Usherin. (974 aa)
	WHRN	Whirlin. (910 aa)
	FGF2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (134 aa)
	PLS1	Plastin-1. (630 aa)
	TPRN	Phostensin domain-containing protein. (386 aa)
	L5K7B7_PTEAL	Neurogenic locus notch like protein 1. (2576 aa)
	MCOLN3	Mucolipin-3. (381 aa)
	L5K5Z5_PTEAL	Transmembrane O-methyltransferase. (258 aa)
	SEC24B	Protein transport protein Sec24B. (1278 aa)
	CLRN2	Clarin-2. (232 aa)
	STRC	Stereocilin. (2094 aa)
	L5JMN4_PTEAL	Leucine-rich repeat-containing protein 1. (82 aa)
	LRRC1	Leucine-rich repeat-containing protein 1. (489 aa)
	CLRN1	Clarin-1. (150 aa)
	MYO6	Myosin-VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1275 aa)
	PDZD7	PDZ domain-containing protein 7. (983 aa)
	JAG2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (906 aa)
	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...] (410 aa)
	GRXCR2	Glutaredoxin domain-containing cysteine-rich protein 2. (248 aa)
	JAG1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1177 aa)
	L5JZF2_PTEAL	Glutaredoxin domain-containing cysteine-rich protein 1. (268 aa)
	BMP4	Bone morphogenetic protein 4. (409 aa)
	RIPOR2	Protein FAM65B. (1095 aa)
	L5L531_PTEAL	Harmonin. (870 aa)
	EOMES	Anion exchange protein. (2647 aa)
	HES1	Transcription factor HES-1. (275 aa)
	LHFPL5	Tetraspan membrane protein of hair cell stereocilia. (246 aa)

Your Current Organism:

Pteropus alecto

NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATOH1	DLL1	L5KPI4	L5KHM4	Protein atonal like protein 1.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.529
ATOH1	FGF20	L5KPI4	L5KBF5	Protein atonal like protein 1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.457
ATOH1	HES1	L5KPI4	L5L1K7	Protein atonal like protein 1.	Transcription factor HES-1.	0.438
ATOH1	JAG1	L5KPI4	L5JY24	Protein atonal like protein 1.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.726
ATOH1	JAG2	L5KPI4	L5JR59	Protein atonal like protein 1.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.434
ATOH1	L5K7B7_PTEAL	L5KPI4	L5K7B7	Protein atonal like protein 1.	Neurogenic locus notch like protein 1.	0.518
ATOH1	MYO6	L5KPI4	L5JPR7	Protein atonal like protein 1.	Myosin-VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.454
BMP4	FGF2	L5K0N6	L5K8D7	Bone morphogenetic protein 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.738
BMP4	FGF20	L5K0N6	L5KBF5	Bone morphogenetic protein 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.519
BMP4	JAG1	L5K0N6	L5JY24	Bone morphogenetic protein 4.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.648
BMP4	L5K7B7_PTEAL	L5K0N6	L5K7B7	Bone morphogenetic protein 4.	Neurogenic locus notch like protein 1.	0.411
CLRN1	L5KC62_PTEAL	L5JNP8	L5KC62	Clarin-1.	Usherin.	0.502
CLRN1	L5KDS3_PTEAL	L5JNP8	L5KDS3	Clarin-1.	Usherin.	0.502
CLRN1	L5KEL2_PTEAL	L5JNP8	L5KEL2	Clarin-1.	Usherin.	0.502
CLRN1	L5L531_PTEAL	L5JNP8	L5L531	Clarin-1.	Harmonin.	0.720
CLRN1	LHFPL5	L5JNP8	L5L0L7	Clarin-1.	Tetraspan membrane protein of hair cell stereocilia.	0.503
CLRN1	PDZD7	L5JNP8	L5JPX9	Clarin-1.	PDZ domain-containing protein 7.	0.657
CLRN1	STRC	L5JNP8	L5K401	Clarin-1.	Stereocilin.	0.510
CLRN1	WHRN	L5JNP8	L5K9L6	Clarin-1.	Whirlin.	0.719
CLRN2	GRXCR2	L5K437	L5JWU7	Clarin-2.	Glutaredoxin domain-containing cysteine-rich protein 2.	0.595