(17 nodes) Thyroglobulin type-1 network (Pteropus alecto)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IGFBP4	Insulin-like growth factor-binding protein 4. (258 aa)
	SPOCK1	Testican-1. (251 aa)
	NID1	Nidogen-1. (1259 aa)
	NID2	Nidogen-2. (1422 aa)
	TACSTD2	Tumor-associated calcium signal transducer 2. (322 aa)
	SPOCK3	Testican-3. (345 aa)
	SPOCK2	Testican-2. (818 aa)
	SMOC1	SPARC-related modular calcium-binding protein 1. (454 aa)
	L5KGU7_PTEAL	SPARC-related modular calcium-binding protein 2. (481 aa)
	L5KJY3_PTEAL	Thyroglobulin. (2513 aa)
	L5KPC6_PTEAL	Insulin-like growth factor-binding protein 1. (116 aa)
	L5KQ42_PTEAL	Insulin-like growth factor-binding protein 3. (80 aa)
	EPCAM	Epithelial cell adhesion molecule. (314 aa)
	IGFBP5	Insulin-like growth factor-binding protein 5. (258 aa)
	CD74	HLA class II histocompatibility antigen gamma chain. (299 aa)
	IGFBP2	Insulin-like growth factor-binding protein 2. (299 aa)
	IGFBP6	Insulin-like growth factor-binding protein 6. (238 aa)

Your Current Organism:

Pteropus alecto

NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IGFBP4	IGFBP6	L5JS14	L5L5T6	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 6.	0.416
IGFBP4	L5KPC6_PTEAL	L5JS14	L5KPC6	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 1.	0.831
IGFBP4	L5KQ42_PTEAL	L5JS14	L5KQ42	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 3.	0.772
IGFBP5	L5KQ42_PTEAL	L5L1B3	L5KQ42	Insulin-like growth factor-binding protein 5.	Insulin-like growth factor-binding protein 3.	0.413
IGFBP6	IGFBP4	L5L5T6	L5JS14	Insulin-like growth factor-binding protein 6.	Insulin-like growth factor-binding protein 4.	0.416
IGFBP6	L5KPC6_PTEAL	L5L5T6	L5KPC6	Insulin-like growth factor-binding protein 6.	Insulin-like growth factor-binding protein 1.	0.414
L5KPC6_PTEAL	IGFBP4	L5KPC6	L5JS14	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 4.	0.831
L5KPC6_PTEAL	IGFBP6	L5KPC6	L5L5T6	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 6.	0.414
L5KPC6_PTEAL	L5KQ42_PTEAL	L5KPC6	L5KQ42	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 3.	0.756
L5KQ42_PTEAL	IGFBP4	L5KQ42	L5JS14	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 4.	0.772
L5KQ42_PTEAL	IGFBP5	L5KQ42	L5L1B3	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 5.	0.413
L5KQ42_PTEAL	L5KPC6_PTEAL	L5KQ42	L5KPC6	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 1.	0.756